diff --git a/docs/sphinx/requirements.txt b/docs/sphinx/requirements.txt index 8fbcc9df9..3158573ab 100644 --- a/docs/sphinx/requirements.txt +++ b/docs/sphinx/requirements.txt @@ -12,4 +12,4 @@ sqlalchemy jinja2==3.1.4 sphinx_gallery pyhdf -sphinx-autoapi==3.1.1 \ No newline at end of file +sphinx-autoapi==3.1.1 diff --git a/docs/sphinx/source/atomic/bound_bound.rst b/docs/sphinx/source/atomic/bound_bound.rst index d0e8a7b26..b4089ae36 100644 --- a/docs/sphinx/source/atomic/bound_bound.rst +++ b/docs/sphinx/source/atomic/bound_bound.rst @@ -23,7 +23,7 @@ We have also used a line list from Verner in the past Translation to SIROCCO format -============================ +====================================== There are several steps to creating the data used in SIROCCO from that in gfall.dat, that are carried out by py_read_kurucz and py_link. The first routine reads the gfall.dat file and creates two output files, a file containing the lines and the associated such as the effective oscillatory strength and a file which contains information about the ion levels. py_read_kurucz chooses only a portion of the Kurucz lines, namely those associated with ions with ionization potentials in a certain range and lines with gf factors exceeding a certain value. The second program py_link attempts to create a model ion with links between the levels and the ions. Both of these routines are driven by .pf files, similar to what are used in SIROCCO. Examples of the .pf files are in the directory py_kurucz In practice we have not used these data for any SIROCCO publications. At some point early in the AGN project, NSH increased the number of lines, and generated lines\_linked\_ver\_2.dat and levels\_ver\_2.dat. I think this was because there was a small bug which meant the oscillator strength cut that was stated was not that which was applied. @@ -69,7 +69,7 @@ one needs to index everything self-consistentl SIROCCO structure -================ +================================ Line data is stored in the data structure **lines** diff --git a/docs/sphinx/source/atomic/bound_bound_electron_collision_strengths.rst b/docs/sphinx/source/atomic/bound_bound_electron_collision_strengths.rst index 88c9da405..73448f504 100644 --- a/docs/sphinx/source/atomic/bound_bound_electron_collision_strengths.rst +++ b/docs/sphinx/source/atomic/bound_bound_electron_collision_strengths.rst @@ -20,7 +20,7 @@ These values of :math:`\Upsilon` simply replace :math:`\Omega`. In the asbsence of data in this format, the Van Regemorter approximation is utilized. Translation to SIROCCO format -============================ +====================================== It is necessary to link each line in our line list with the relevant electron collision strength. This is achieved using the python script "coll_stren_lookup.py" which first reads in the "lines_linked_ver_2.py" line list, then attempts to work out which lines are which by comparing the energy and the oscillator strength of the line. If these match to within a factor of 10% then the code logs this as a possible match. If better matches come along, then the code adopts those instead. @@ -67,7 +67,7 @@ and So, to get :math:`\Upsilon` for a given T, one converts T to x via the correct equation, then linearly interpolate between values of :math:`y(x)`, then convert back to :math:`\Upsilon`. SIROCCO structure -================ +========================== The data is stored in SIROCCO in the Coll\_stren structure which has memebers diff --git a/docs/sphinx/source/atomic/bound_free_topbase.rst b/docs/sphinx/source/atomic/bound_free_topbase.rst index 7464e3b92..5f2a56ce4 100644 --- a/docs/sphinx/source/atomic/bound_free_topbase.rst +++ b/docs/sphinx/source/atomic/bound_free_topbase.rst @@ -9,7 +9,7 @@ Obtained from The `Opacity project `_ . The data is downloaded from the vizier site linked and put into a file called "electron_yield.data" Translation to SIROCCO format -============================ +====================================== The translation takes place using the python script "kaastra_2_py.py" which takes the saved raw data file "electron_yield.data" and compares it line by line to the inner shell cross section data in "vy_innershell_tab.data"(see above). The n shell and l subshell to which each record applies is coded in the KM data and needs to be decoded. This is what the script does, and all the script then does is output the yield data into a new file "kaastra_electron_yield.data" which contains the n and l cross reference. @@ -36,7 +36,7 @@ The data is linked to the correct inner shell photoionization cross section (and SIROCCO structure -================ +========================== The data is stored in SIROCCO in the inner_elec_yield structure which contains diff --git a/docs/sphinx/source/atomic/elem_ions.rst b/docs/sphinx/source/atomic/elem_ions.rst index 7ddc52ccc..18db3a9ab 100644 --- a/docs/sphinx/source/atomic/elem_ions.rst +++ b/docs/sphinx/source/atomic/elem_ions.rst @@ -11,7 +11,7 @@ This data comes from `Verner, Barthel & Tytler, 1994, ApJ 108, 287. `_ . The data is downloaded from the vizier site linked and put into a file called "fluorescent\_yield.data" Translation to SIROCCO format -============================ +====================================== The translation takes place using the python script "kaastra_2_py.py". All identical to electron yield, but input file is "fluorescent_yield.data" and output is "kaastra_fluorescent_yield.data" @@ -35,7 +35,7 @@ The data is linked to the correct inner shell photoionization cross section (and SIROCCO structure -================ +========================== The data is stored in SIROCCO in the inner_fluor_yield structure which contains diff --git a/docs/sphinx/source/conf.py b/docs/sphinx/source/conf.py index 99081aedb..f868d1a13 100755 --- a/docs/sphinx/source/conf.py +++ b/docs/sphinx/source/conf.py @@ -87,9 +87,9 @@ # built documents. # # The short X.Y version. -version = '88' +version = '0.1' # The full version, including alpha/beta/rc tags. -release = '88a' +release = '0.1' # The language for content autogenerated by Sphinx. Refer to documentation # for a list of supported languages. diff --git a/docs/sphinx/source/developer/cuda.rst b/docs/sphinx/source/developer/cuda.rst index e7b5a9ec9..03e9261f8 100644 --- a/docs/sphinx/source/developer/cuda.rst +++ b/docs/sphinx/source/developer/cuda.rst @@ -411,6 +411,6 @@ shown below. # So to compile SIROCCO, we have something which looks vaguely like this. Note that # we use the CUDA_OBJECTS recipe as a requirement for the sirocco recipe. This CUSOLVER_STATUS_SUCCESS # the CUDA source to be compiled to object code *if* NVCC is defined - sirocco: startup sirocco.o $(sirocco_objects) $(CUDA_OBJECTS) + sirocco: startup sirocco.o $(sirocco_objects) $(CUDA_OBJECTS) $(CC) $(CFLAGS) sirocco.o $(sirocco_objects) $(CUDA_OBJECTS) $(kpar_objects) $(LDFLAGS) -o sirocco diff --git a/docs/sphinx/source/py_progs.rst b/docs/sphinx/source/py_progs.rst index 3523167e5..144526f96 100644 --- a/docs/sphinx/source/py_progs.rst +++ b/docs/sphinx/source/py_progs.rst @@ -1,7 +1,7 @@ -SIROCCO Scripts +Python Scripts ################################ -There are several SIROCCO scripts written to prepare input for +There are several python scripts written to prepare input for and analyse the output of SIROCCO. Some of the more useful scripts/modules are documented below. diff --git a/docs/sphinx/source/py_progs/MakeMacro/MacroCombine.rst b/docs/sphinx/source/py_progs/MakeMacro/MacroCombine.rst index 34c24f0be..9d43dcc83 100644 --- a/docs/sphinx/source/py_progs/MakeMacro/MacroCombine.rst +++ b/docs/sphinx/source/py_progs/MakeMacro/MacroCombine.rst @@ -4,11 +4,6 @@ .. automodule:: MacroCombine - - - - - .. rubric:: Functions .. autosummary:: @@ -25,16 +20,4 @@ steer write_phot xguess - - - - - - - - - - - - - + \ No newline at end of file diff --git a/docs/sphinx/source/py_progs/MakeMacro/MakeMacro.rst b/docs/sphinx/source/py_progs/MakeMacro/MakeMacro.rst index f1564ef29..4270e74bb 100644 --- a/docs/sphinx/source/py_progs/MakeMacro/MakeMacro.rst +++ b/docs/sphinx/source/py_progs/MakeMacro/MakeMacro.rst @@ -4,11 +4,6 @@ .. automodule:: MakeMacro - - - - - .. rubric:: Functions .. autosummary:: @@ -23,16 +18,4 @@ make_phot print_elvlc write_phot - - - - - - - - - - - - - + \ No newline at end of file diff --git a/docs/sphinx/source/py_progs/MakeMacro/RedoPhot.rst b/docs/sphinx/source/py_progs/MakeMacro/RedoPhot.rst index 47a60f86a..d01b1aa50 100644 --- a/docs/sphinx/source/py_progs/MakeMacro/RedoPhot.rst +++ b/docs/sphinx/source/py_progs/MakeMacro/RedoPhot.rst @@ -4,11 +4,6 @@ .. automodule:: RedoPhot - - - - - .. rubric:: Functions .. autosummary:: @@ -19,16 +14,4 @@ redo_one steer write_phot_tab - - - - - - - - - - - - - + \ No newline at end of file diff --git a/docs/sphinx/source/py_progs/development/CheckAtomic.rst b/docs/sphinx/source/py_progs/development/CheckAtomic.rst index 14f0dd443..faf7c739d 100644 --- a/docs/sphinx/source/py_progs/development/CheckAtomic.rst +++ b/docs/sphinx/source/py_progs/development/CheckAtomic.rst @@ -4,11 +4,6 @@ .. automodule:: CheckAtomic - - - - - .. rubric:: Functions .. autosummary:: @@ -20,16 +15,4 @@ get_level_tab get_line_tab xread - - - - - - - - - - - - - + \ No newline at end of file diff --git a/docs/sphinx/source/py_progs/development/add_param.rst b/docs/sphinx/source/py_progs/development/add_param.rst index dad8c838f..6f72db64d 100644 --- a/docs/sphinx/source/py_progs/development/add_param.rst +++ b/docs/sphinx/source/py_progs/development/add_param.rst @@ -4,11 +4,6 @@ .. automodule:: add_param - - - - - .. rubric:: Functions .. autosummary:: @@ -17,16 +12,4 @@ doit read_file read_table - - - - - - - - - - - - - + \ No newline at end of file diff --git a/docs/sphinx/source/py_progs/development/autogenerate_parameter_docs.rst b/docs/sphinx/source/py_progs/development/autogenerate_parameter_docs.rst index 7d00c9706..7bb51feb1 100644 --- a/docs/sphinx/source/py_progs/development/autogenerate_parameter_docs.rst +++ b/docs/sphinx/source/py_progs/development/autogenerate_parameter_docs.rst @@ -4,11 +4,6 @@ .. automodule:: autogenerate_parameter_docs - - - - - .. rubric:: Functions .. autosummary:: @@ -23,16 +18,4 @@ read_parameters should_use_block yaml_output - - - - - - - - - - - - - + \ No newline at end of file diff --git a/docs/sphinx/source/py_progs/development/autogenerate_rtd_pages.rst b/docs/sphinx/source/py_progs/development/autogenerate_rtd_pages.rst index c34e55ecf..c11be0ac7 100644 --- a/docs/sphinx/source/py_progs/development/autogenerate_rtd_pages.rst +++ b/docs/sphinx/source/py_progs/development/autogenerate_rtd_pages.rst @@ -4,11 +4,6 @@ .. automodule:: autogenerate_rtd_pages - - - - - .. rubric:: Functions .. autosummary:: @@ -20,16 +15,4 @@ write_header_by_level write_rst write_str_indent - - - - - - - - - - - - - + \ No newline at end of file diff --git a/docs/sphinx/source/py_progs/development/dox.rst b/docs/sphinx/source/py_progs/development/dox.rst index 4c22a375d..99cd3ed81 100644 --- a/docs/sphinx/source/py_progs/development/dox.rst +++ b/docs/sphinx/source/py_progs/development/dox.rst @@ -4,11 +4,6 @@ .. automodule:: dox - - - - - .. rubric:: Functions .. autosummary:: @@ -21,16 +16,4 @@ read_file read_table steer - - - - - - - - - - - - - + \ No newline at end of file diff --git a/docs/sphinx/source/py_progs/development/dox_check.rst b/docs/sphinx/source/py_progs/development/dox_check.rst index 15ee07ce8..05f709448 100644 --- a/docs/sphinx/source/py_progs/development/dox_check.rst +++ b/docs/sphinx/source/py_progs/development/dox_check.rst @@ -4,26 +4,9 @@ .. automodule:: dox_check - - - - - .. rubric:: Functions .. autosummary:: doit - - - - - - - - - - - - - + \ No newline at end of file diff --git a/docs/sphinx/source/py_progs/development/init_extern.rst b/docs/sphinx/source/py_progs/development/init_extern.rst index 8e6f4e35b..0471365eb 100644 --- a/docs/sphinx/source/py_progs/development/init_extern.rst +++ b/docs/sphinx/source/py_progs/development/init_extern.rst @@ -4,26 +4,9 @@ .. automodule:: init_extern - - - - - .. rubric:: Functions .. autosummary:: doit - - - - - - - - - - - - - + \ No newline at end of file diff --git a/docs/sphinx/source/py_progs/development/make_rtheta.rst b/docs/sphinx/source/py_progs/development/make_rtheta.rst index 495d5049d..ba4bae1ee 100644 --- a/docs/sphinx/source/py_progs/development/make_rtheta.rst +++ b/docs/sphinx/source/py_progs/development/make_rtheta.rst @@ -4,11 +4,6 @@ .. automodule:: make_rtheta - - - - - .. rubric:: Functions .. autosummary:: @@ -16,16 +11,4 @@ doit gen_model get_inputs - - - - - - - - - - - - - + \ No newline at end of file diff --git a/docs/sphinx/source/py_progs/development/pf_check.rst b/docs/sphinx/source/py_progs/development/pf_check.rst index d95114600..ae67b491a 100644 --- a/docs/sphinx/source/py_progs/development/pf_check.rst +++ b/docs/sphinx/source/py_progs/development/pf_check.rst @@ -4,11 +4,6 @@ .. automodule:: pf_check - - - - - .. rubric:: Functions .. autosummary:: @@ -16,16 +11,4 @@ doit steer travis - - - - - - - - - - - - - + \ No newline at end of file diff --git a/docs/sphinx/source/py_progs/development/retro.rst b/docs/sphinx/source/py_progs/development/retro.rst index e6065bf74..320cf555a 100644 --- a/docs/sphinx/source/py_progs/development/retro.rst +++ b/docs/sphinx/source/py_progs/development/retro.rst @@ -4,11 +4,6 @@ .. automodule:: retro - - - - - .. rubric:: Functions .. autosummary:: @@ -26,16 +21,4 @@ run_many run_one xsmooth - - - - - - - - - - - - - + \ No newline at end of file diff --git a/docs/sphinx/source/py_progs/development/run_indent.rst b/docs/sphinx/source/py_progs/development/run_indent.rst index 27ace212a..c80439bae 100644 --- a/docs/sphinx/source/py_progs/development/run_indent.rst +++ b/docs/sphinx/source/py_progs/development/run_indent.rst @@ -4,11 +4,6 @@ .. automodule:: run_indent - - - - - .. rubric:: Functions .. autosummary:: @@ -18,16 +13,4 @@ doit get_gnu steer - - - - - - - - - - - - - + \ No newline at end of file diff --git a/docs/sphinx/source/py_progs/development/update_param.rst b/docs/sphinx/source/py_progs/development/update_param.rst index 1a17cb127..b863a59a7 100644 --- a/docs/sphinx/source/py_progs/development/update_param.rst +++ b/docs/sphinx/source/py_progs/development/update_param.rst @@ -4,11 +4,6 @@ .. automodule:: update_param - - - - - .. rubric:: Functions .. autosummary:: @@ -17,16 +12,4 @@ get_root_from_filepath main update_parameter - - - - - - - - - - - - - + \ No newline at end of file diff --git a/docs/sphinx/source/py_progs/regression/regression.rst b/docs/sphinx/source/py_progs/regression/regression.rst index b82979b6b..fe9492c76 100644 --- a/docs/sphinx/source/py_progs/regression/regression.rst +++ b/docs/sphinx/source/py_progs/regression/regression.rst @@ -4,11 +4,6 @@ .. automodule:: regression - - - - - .. rubric:: Functions .. autosummary:: @@ -19,16 +14,4 @@ run_cmds steer sum_errors - - - - - - - - - - - - - + \ No newline at end of file diff --git a/docs/sphinx/source/py_progs/regression/regression_check.rst b/docs/sphinx/source/py_progs/regression/regression_check.rst index 79765e935..418ba6d8f 100644 --- a/docs/sphinx/source/py_progs/regression/regression_check.rst +++ b/docs/sphinx/source/py_progs/regression/regression_check.rst @@ -4,11 +4,6 @@ .. automodule:: regression_check - - - - - .. rubric:: Functions .. autosummary:: @@ -19,16 +14,4 @@ read_file read_table steer - - - - - - - - - - - - - + \ No newline at end of file diff --git a/docs/sphinx/source/py_progs/regression/regression_nsh.rst b/docs/sphinx/source/py_progs/regression/regression_nsh.rst index a81caeed2..b1cc2075c 100644 --- a/docs/sphinx/source/py_progs/regression/regression_nsh.rst +++ b/docs/sphinx/source/py_progs/regression/regression_nsh.rst @@ -4,11 +4,6 @@ .. automodule:: regression_nsh - - - - - .. rubric:: Functions .. autosummary:: @@ -19,16 +14,4 @@ run_cmds steer sum_errors - - - - - - - - - - - - - + \ No newline at end of file diff --git a/docs/sphinx/source/py_progs/regression/regression_plot.rst b/docs/sphinx/source/py_progs/regression/regression_plot.rst index 2f7ea0883..3518c78de 100644 --- a/docs/sphinx/source/py_progs/regression/regression_plot.rst +++ b/docs/sphinx/source/py_progs/regression/regression_plot.rst @@ -4,11 +4,6 @@ .. automodule:: regression_plot - - - - - .. rubric:: Functions .. autosummary:: @@ -21,16 +16,4 @@ read_file read_table xsmooth - - - - - - - - - - - - - + \ No newline at end of file diff --git a/docs/sphinx/source/py_progs/running/ModSum.rst b/docs/sphinx/source/py_progs/running/ModSum.rst index 47369434a..8d5c33632 100644 --- a/docs/sphinx/source/py_progs/running/ModSum.rst +++ b/docs/sphinx/source/py_progs/running/ModSum.rst @@ -4,11 +4,6 @@ .. automodule:: ModSum - - - - - .. rubric:: Functions .. autosummary:: @@ -18,16 +13,4 @@ get_pf get_status make_master - - - - - - - - - - - - - + \ No newline at end of file diff --git a/docs/sphinx/source/py_progs/running/cloudy_pl_loop.rst b/docs/sphinx/source/py_progs/running/cloudy_pl_loop.rst index 467aefb39..bb8c2fe65 100644 --- a/docs/sphinx/source/py_progs/running/cloudy_pl_loop.rst +++ b/docs/sphinx/source/py_progs/running/cloudy_pl_loop.rst @@ -3,21 +3,4 @@ .. automodule:: cloudy_pl_loop - - - - - - - - - - - - - - - - - - + \ No newline at end of file diff --git a/docs/sphinx/source/py_progs/running/pf_grid.rst b/docs/sphinx/source/py_progs/running/pf_grid.rst index 8521da79e..b9f7e827c 100644 --- a/docs/sphinx/source/py_progs/running/pf_grid.rst +++ b/docs/sphinx/source/py_progs/running/pf_grid.rst @@ -4,11 +4,6 @@ .. automodule:: pf_grid - - - - - .. rubric:: Functions .. autosummary:: @@ -21,16 +16,4 @@ export_results get_input log_ints - - - - - - - - - - - - - + \ No newline at end of file diff --git a/docs/sphinx/source/py_progs/running/py79_pl_loop.rst b/docs/sphinx/source/py_progs/running/py79_pl_loop.rst index 21dd10b8d..9362f8892 100644 --- a/docs/sphinx/source/py_progs/running/py79_pl_loop.rst +++ b/docs/sphinx/source/py_progs/running/py79_pl_loop.rst @@ -3,21 +3,4 @@ .. automodule:: py79_pl_loop - - - - - - - - - - - - - - - - - - + \ No newline at end of file diff --git a/docs/sphinx/source/py_progs/running/python_pl_loop.rst b/docs/sphinx/source/py_progs/running/python_pl_loop.rst index 176a2277b..5fd12010f 100644 --- a/docs/sphinx/source/py_progs/running/python_pl_loop.rst +++ b/docs/sphinx/source/py_progs/running/python_pl_loop.rst @@ -3,21 +3,4 @@ .. automodule:: python_pl_loop - - - - - - - - - - - - - - - - - - + \ No newline at end of file diff --git a/docs/sphinx/source/py_progs/running/run_many.rst b/docs/sphinx/source/py_progs/running/run_many.rst index fa03f4c8a..3f21d9fb7 100644 --- a/docs/sphinx/source/py_progs/running/run_many.rst +++ b/docs/sphinx/source/py_progs/running/run_many.rst @@ -4,11 +4,6 @@ .. automodule:: run_many - - - - - .. rubric:: Functions .. autosummary:: @@ -18,16 +13,4 @@ read_file run_one steer - - - - - - - - - - - - - + \ No newline at end of file diff --git a/docs/sphinx/source/py_progs/testing/CompareAtomic.rst b/docs/sphinx/source/py_progs/testing/CompareAtomic.rst index 976e08d58..ef8cf5849 100644 --- a/docs/sphinx/source/py_progs/testing/CompareAtomic.rst +++ b/docs/sphinx/source/py_progs/testing/CompareAtomic.rst @@ -4,11 +4,6 @@ .. automodule:: CompareAtomic - - - - - .. rubric:: Functions .. autosummary:: @@ -16,16 +11,4 @@ compare_files doit xread - - - - - - - - - - - - - + \ No newline at end of file diff --git a/docs/sphinx/source/py_progs/testing/balmer_decrement.rst b/docs/sphinx/source/py_progs/testing/balmer_decrement.rst index 1055b557c..7da0da699 100644 --- a/docs/sphinx/source/py_progs/testing/balmer_decrement.rst +++ b/docs/sphinx/source/py_progs/testing/balmer_decrement.rst @@ -4,26 +4,9 @@ .. automodule:: balmer_decrement - - - - - .. rubric:: Functions .. autosummary:: BalmerTest - - - - - - - - - - - - - + \ No newline at end of file diff --git a/docs/sphinx/source/py_progs/testing/compare_ion.rst b/docs/sphinx/source/py_progs/testing/compare_ion.rst index 568d559f5..b6cf6ad11 100644 --- a/docs/sphinx/source/py_progs/testing/compare_ion.rst +++ b/docs/sphinx/source/py_progs/testing/compare_ion.rst @@ -4,11 +4,6 @@ .. automodule:: compare_ion - - - - - .. rubric:: Functions .. autosummary:: @@ -16,16 +11,4 @@ compare_ion edge xsmooth - - - - - - - - - - - - - + \ No newline at end of file diff --git a/docs/sphinx/source/py_progs/testing/grid_check.rst b/docs/sphinx/source/py_progs/testing/grid_check.rst index 847ef8d41..233ac295b 100644 --- a/docs/sphinx/source/py_progs/testing/grid_check.rst +++ b/docs/sphinx/source/py_progs/testing/grid_check.rst @@ -4,27 +4,10 @@ .. automodule:: grid_check - - - - - .. rubric:: Functions .. autosummary:: doit read_file - - - - - - - - - - - - - + \ No newline at end of file diff --git a/docs/sphinx/source/py_progs/testing/run_check.rst b/docs/sphinx/source/py_progs/testing/run_check.rst index 11190557d..26c1ec30f 100644 --- a/docs/sphinx/source/py_progs/testing/run_check.rst +++ b/docs/sphinx/source/py_progs/testing/run_check.rst @@ -4,11 +4,6 @@ .. automodule:: run_check - - - - - .. rubric:: Functions .. autosummary:: @@ -23,16 +18,4 @@ steer windsave2table xwindsave2table - - - - - - - - - - - - - + \ No newline at end of file diff --git a/docs/sphinx/source/py_progs/testing/test_masterfiles.rst b/docs/sphinx/source/py_progs/testing/test_masterfiles.rst index 362c21668..b4e8fa318 100644 --- a/docs/sphinx/source/py_progs/testing/test_masterfiles.rst +++ b/docs/sphinx/source/py_progs/testing/test_masterfiles.rst @@ -4,11 +4,6 @@ .. automodule:: test_masterfiles - - - - - .. rubric:: Functions .. autosummary:: @@ -16,16 +11,4 @@ check_run run_file run_test - - - - - - - - - - - - - + \ No newline at end of file diff --git a/docs/sphinx/source/py_progs/testing/xcompare.rst b/docs/sphinx/source/py_progs/testing/xcompare.rst index 36794de4a..b0c381024 100644 --- a/docs/sphinx/source/py_progs/testing/xcompare.rst +++ b/docs/sphinx/source/py_progs/testing/xcompare.rst @@ -4,11 +4,6 @@ .. automodule:: xcompare - - - - - .. rubric:: Functions .. autosummary:: @@ -22,16 +17,4 @@ windsave2table xplot xsmooth - - - - - - - - - - - - - + \ No newline at end of file diff --git a/docs/sphinx/source/py_progs/utilities/import_1d.rst b/docs/sphinx/source/py_progs/utilities/import_1d.rst index 829e9ad65..ca29a52e1 100644 --- a/docs/sphinx/source/py_progs/utilities/import_1d.rst +++ b/docs/sphinx/source/py_progs/utilities/import_1d.rst @@ -4,11 +4,6 @@ .. automodule:: import_1d - - - - - .. rubric:: Functions .. autosummary:: @@ -16,16 +11,4 @@ doit read_file read_table - - - - - - - - - - - - - + \ No newline at end of file diff --git a/docs/sphinx/source/py_progs/utilities/import_cyl.rst b/docs/sphinx/source/py_progs/utilities/import_cyl.rst index f58164d9b..cb3f66a6c 100644 --- a/docs/sphinx/source/py_progs/utilities/import_cyl.rst +++ b/docs/sphinx/source/py_progs/utilities/import_cyl.rst @@ -4,11 +4,6 @@ .. automodule:: import_cyl - - - - - .. rubric:: Functions .. autosummary:: @@ -16,16 +11,4 @@ doit read_file read_table - - - - - - - - - - - - - + \ No newline at end of file diff --git a/docs/sphinx/source/py_progs/utilities/import_rtheta.rst b/docs/sphinx/source/py_progs/utilities/import_rtheta.rst index 4990c8b44..45a8454e0 100644 --- a/docs/sphinx/source/py_progs/utilities/import_rtheta.rst +++ b/docs/sphinx/source/py_progs/utilities/import_rtheta.rst @@ -4,11 +4,6 @@ .. automodule:: import_rtheta - - - - - .. rubric:: Functions .. autosummary:: @@ -16,16 +11,4 @@ doit read_file read_table - - - - - - - - - - - - - + \ No newline at end of file diff --git a/docs/sphinx/source/py_progs/utilities/kpar.rst b/docs/sphinx/source/py_progs/utilities/kpar.rst index 11f3077d4..df68d32c7 100644 --- a/docs/sphinx/source/py_progs/utilities/kpar.rst +++ b/docs/sphinx/source/py_progs/utilities/kpar.rst @@ -4,11 +4,6 @@ .. automodule:: kpar - - - - - .. rubric:: Functions .. autosummary:: @@ -18,16 +13,4 @@ rdpar read_file read_table - - - - - - - - - - - - - + \ No newline at end of file diff --git a/docs/sphinx/source/py_progs/utilities/py_classes.rst b/docs/sphinx/source/py_progs/utilities/py_classes.rst index 35e2bea3e..592f0a696 100644 --- a/docs/sphinx/source/py_progs/utilities/py_classes.rst +++ b/docs/sphinx/source/py_progs/utilities/py_classes.rst @@ -4,15 +4,6 @@ .. automodule:: py_classes - - - - - - - - - .. rubric:: Classes .. autosummary:: @@ -23,12 +14,4 @@ line specclass spectotclass - - - - - - - - - + \ No newline at end of file diff --git a/docs/sphinx/source/py_progs/utilities/py_error.rst b/docs/sphinx/source/py_progs/utilities/py_error.rst index 18c5092fa..b4715acd2 100644 --- a/docs/sphinx/source/py_progs/utilities/py_error.rst +++ b/docs/sphinx/source/py_progs/utilities/py_error.rst @@ -4,26 +4,9 @@ .. automodule:: py_error - - - - - .. rubric:: Functions .. autosummary:: doit - - - - - - - - - - - - - + \ No newline at end of file diff --git a/docs/sphinx/source/py_progs/utilities/py_plot_util.rst b/docs/sphinx/source/py_progs/utilities/py_plot_util.rst index c60fc8102..0cc415137 100644 --- a/docs/sphinx/source/py_progs/utilities/py_plot_util.rst +++ b/docs/sphinx/source/py_progs/utilities/py_plot_util.rst @@ -4,11 +4,6 @@ .. automodule:: py_plot_util - - - - - .. rubric:: Functions .. autosummary:: @@ -21,16 +16,4 @@ run_py_wind smooth wind_to_masked - - - - - - - - - - - - - + \ No newline at end of file diff --git a/docs/sphinx/source/py_progs/utilities/py_read_output.rst b/docs/sphinx/source/py_progs/utilities/py_read_output.rst index a44e3616f..9300c42ba 100644 --- a/docs/sphinx/source/py_progs/utilities/py_read_output.rst +++ b/docs/sphinx/source/py_progs/utilities/py_read_output.rst @@ -4,11 +4,6 @@ .. automodule:: py_read_output - - - - - .. rubric:: Functions .. autosummary:: @@ -23,16 +18,4 @@ setpars thinshell_read write_pf - - - - - - - - - - - - - + \ No newline at end of file diff --git a/docs/sphinx/source/py_progs/utilities/watchdog.rst b/docs/sphinx/source/py_progs/utilities/watchdog.rst index 7de8e6517..99c420b64 100644 --- a/docs/sphinx/source/py_progs/utilities/watchdog.rst +++ b/docs/sphinx/source/py_progs/utilities/watchdog.rst @@ -4,27 +4,10 @@ .. automodule:: watchdog - - - - - .. rubric:: Functions .. autosummary:: help strip_error - - - - - - - - - - - - - + \ No newline at end of file diff --git a/docs/sphinx/source/py_progs/utilities/xhtml.rst b/docs/sphinx/source/py_progs/utilities/xhtml.rst index 956a267b4..33bb336e0 100644 --- a/docs/sphinx/source/py_progs/utilities/xhtml.rst +++ b/docs/sphinx/source/py_progs/utilities/xhtml.rst @@ -4,11 +4,6 @@ .. automodule:: xhtml - - - - - .. rubric:: Functions .. autosummary:: @@ -26,16 +21,4 @@ preformat table test - - - - - - - - - - - - - + \ No newline at end of file