Allow data dir to be independent of install dir #44
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I am suggesting a few changes that I think may be useful for installing eggnog-mapper via bioconda and using it in a galaxy installation. This allows the data dir to be independent of the installation directory. Also allows a path for the diamond db.
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looks nice! thanks @jj-umn |
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@jhcepas Thanks. When making a galaxy tool, we try to have a minuscule amount of data in the tool test-data directory to verify the tool is working. Being able to specify paths allows use of tiny diamond db or hmm db from that test-data dir. |
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that sounds great. Would you be willing to share that testing code and data? |
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@jhcepas If I can figure out some minimal testing data, I'll be happy to share. |
return value for get_db_present(level) should be a boolean
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I am suggesting a few changes that I think may be useful for installing
eggnog-mapper via bioconda and using it in a galaxy installation. This
allows the data dir to be independent of the installation directory.
Also allows a path for the diamond db.