v1.2.1

2020-06-16

• fixed issue with 0000 magic number in header
• slightly faster parsing of ploidy states

v1.2.0

2020-06-10

• reuse probabilities and minor allele dosage if computed previously
• sped up minor allele dosage by avoiding numpy copy operation
• can fetch variants within a genomic region if bgen index file is present

v1.1.10

2020-06-04 - faster probabilities

• sped up parsing probabilities by avoiding an integer multiplication
• sped up parsing ploidy and missingness states
• sped up setting sample IDs

v1.1.9

2020-06-03 - minor fixes

• sped up calculating minor allele dosage
• simplified parsing genotype probabilities

v1.1.8

2020-06-01 - minor fixes

• sped up loading sample IDs from sample file
• fixed BgenFile context handling
• fixed bug with iteration if all variants loaded into memory
• added unit tests for minor allele dosage

v1.1.7

2020-05-28 - sped up parsing probabilities

• calculates genotype probabilities from integer representation to float probability with multiplies, which can be faster than divides

v1.1.6

2020-05-27 - minor fixes

• sped up setting ploidy when all samples have same ploidy
• sped up getting minor allele dosage by determining minor allele from subset of samples

v1.1.5

2020-05-21 - fix memory leak

• avoid memory leak when repeatedly getting probabilities/dosages from same variant

v1.1.4

2020-05-14 - fixed index issue

• fixed issue with bgenix indexes when multiprocessing

v1.1.3

2020-05-14 - improved use of index files

• more efficient iteration through bgen files
• added functions to get variants from bgen by position or rsid