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Check for colliding EC numbers for complexes #1

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jeffkimbrel opened this issue Nov 7, 2022 · 0 comments
Open

Check for colliding EC numbers for complexes #1

jeffkimbrel opened this issue Nov 7, 2022 · 0 comments

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@jeffkimbrel
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If two different genes have the same EC number, yet those two genes form a complex and are both needed, gator could erroneously call that reaction present even if one component was missing.

The --verify_db command could check for this and print out an error. Or, we can keep the EC column out of the calculations. I don't think it is used now anyway, and if it is it is only when using the --patric flag.

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