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config.yaml
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metadata_features:
- sample
- batch
- age
- cluster
- Total_UMIs
- log10UMI
- num_genes_expressed
- mito_ratio
- cycle_phase
- cycle_G1_score
- cycle_G2M_score
- cycle_S_score
- cell_type
- cellPattern1
- cellPattern2
- cellPattern3
- cellPattern4
- cellPattern5
- cellPattern6
- cellPattern7
- cellPattern8
- cellPattern9
- cellPattern10
- cellPattern11
- cellPattern12
- cellPattern13
- cellPattern14
- cellPattern15
- cellPattern16
- cellPattern17
- cellPattern18
- cellPattern19
- cellPattern20
- cellPattern21
- cellPattern22
- cellPattern23
- cellPattern24
- cellPattern25
- cellPattern26
- cellPattern27
- cellPattern28
- cellPattern29
- cellPattern30
- cellPattern31
- cellPattern32
- cellPattern33
- cellPattern34
- cellPattern35
- cellPattern36
- cellPattern37
- cellPattern38
- cellPattern39
- cellPattern40
- cellPattern41
- cellPattern42
- cellPattern43
- cellPattern44
- cellPattern45
- cellPattern46
- cellPattern47
- cellPattern48
- cellPattern49
- cellPattern50
continuous_features_to_fix:
- Total_UMIs
- log10UMI
- num_genes_expressed
- mito_ratio
- cycle_G1_score
- cycle_G2M_score
- cycle_S_score
- cellPattern1
- cellPattern2
- cellPattern3
- cellPattern4
- cellPattern5
- cellPattern6
- cellPattern7
- cellPattern8
- cellPattern9
- cellPattern10
- cellPattern11
- cellPattern12
- cellPattern13
- cellPattern14
- cellPattern15
- cellPattern16
- cellPattern17
- cellPattern18
- cellPattern19
- cellPattern20
- cellPattern21
- cellPattern22
- cellPattern23
- cellPattern24
- cellPattern25
- cellPattern26
- cellPattern27
- cellPattern28
- cellPattern29
- cellPattern30
- cellPattern31
- cellPattern32
- cellPattern33
- cellPattern34
- cellPattern35
- cellPattern36
- cellPattern37
- cellPattern38
- cellPattern39
- cellPattern40
- cellPattern41
- cellPattern42
- cellPattern43
- cellPattern44
- cellPattern45
- cellPattern46
- cellPattern47
- cellPattern48
- cellPattern49
- cellPattern50