Generic-variation-analysis-reporting-tests.yml

- doc: Test outline for Generic-variation-analysis-reporting
  job:
    AF Filter: 0.05
    DP Filter: 1
    DP_ALT Filter: 10
    Variation data to report:
      class: Collection
      collection_type: list
      elements:
      - class: File
        identifier: filtered variants ERR3485802
        path: test-data/Variation data to report_filtered variants ERR3485802.vcf
  outputs:
    af_recalculated:
      element_tests:
        filtered variants ERR3485802:
          path: test-data/af_recalculated.tabular
          compare: diff
          lines_diff: 6
    all_variants_all_samples:
      path: test-data/all_variants_all_samples.tabular
      compare: diff
      lines_diff: 6
    by_variant_report:
      path: test-data/by_variant_report.tabular
      compare: diff
      lines_diff: 6
    combined_variant_report:
      path: test-data/combined_variant_report.tabular
      compare: diff
      lines_diff: 6