diff --git a/CHANGELOG.md b/CHANGELOG.md index c313a1a..6a63ffe 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,5 +1,10 @@ # Changelog +## [0.4] 2023-01-16 + +### Automatic update +- `toolshed.g2.bx.psu.edu/repos/devteam/bamtools_filter/bamFilter/2.5.1+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/devteam/bamtools_filter/bamFilter/2.5.2+galaxy1` + ## [0.3] 2022-12-17 ### Automatic update diff --git a/atacseq.ga b/atacseq.ga index 9cd5557..ddf9f12 100644 --- a/atacseq.ga +++ b/atacseq.ga @@ -10,7 +10,7 @@ ], "format-version": "0.1", "license": "MIT", - "release": "0.3", + "release": "0.4", "name": "ATACseq", "steps": { "0": { @@ -225,7 +225,7 @@ }, "5": { "annotation": "", - "content_id": "toolshed.g2.bx.psu.edu/repos/devteam/bamtools_filter/bamFilter/2.5.1+galaxy0", + "content_id": "toolshed.g2.bx.psu.edu/repos/devteam/bamtools_filter/bamFilter/2.5.2+galaxy1", "errors": null, "id": 5, "input_connections": { @@ -236,7 +236,7 @@ }, "inputs": [], "label": "filter MAPQ30 concordant pairs and not mitochondrial pairs", - "name": "Filter", + "name": "Filter BAM", "outputs": [ { "name": "out_file2", @@ -270,15 +270,15 @@ "output_name": "out_file1" } }, - "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/bamtools_filter/bamFilter/2.5.1+galaxy0", + "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/bamtools_filter/bamFilter/2.5.2+galaxy1", "tool_shed_repository": { - "changeset_revision": "1dfd95ee241e", + "changeset_revision": "108db6635177", "name": "bamtools_filter", "owner": "devteam", "tool_shed": "toolshed.g2.bx.psu.edu" }, "tool_state": "{\"conditions\": [{\"__index__\": 0, \"filters\": [{\"__index__\": 0, \"bam_property\": {\"bam_property_selector\": \"mapQuality\", \"__current_case__\": 14, \"bam_property_value\": \">=30\"}}, {\"__index__\": 1, \"bam_property\": {\"bam_property_selector\": \"isProperPair\", \"__current_case__\": 11, \"bam_property_value\": \"true\"}}, {\"__index__\": 2, \"bam_property\": {\"bam_property_selector\": \"reference\", \"__current_case__\": 20, \"bam_property_value\": \"!chrM\"}}, {\"__index__\": 3, \"bam_property\": {\"bam_property_selector\": \"mateReference\", \"__current_case__\": 16, \"bam_property_value\": \"!MT\"}}]}], \"input_bam\": {\"__class__\": \"ConnectedValue\"}, \"rule_configuration\": {\"rules_selector\": \"false\", \"__current_case__\": 0}, \"__page__\": null, \"__rerun_remap_job_id__\": null}", - "tool_version": "2.5.1+galaxy0", + "tool_version": "2.5.2+galaxy1", "type": "tool", "uuid": "eba4c413-30c9-4bab-a088-dc12d5956c91", "workflow_outputs": [] diff --git a/ro-crate-metadata.json b/ro-crate-metadata.json index eae8aef..d95755f 100644 --- a/ro-crate-metadata.json +++ b/ro-crate-metadata.json @@ -21,7 +21,7 @@ { "@id": "./", "@type": "Dataset", - "datePublished": "2023-01-13T13:28:37.647185", + "datePublished": "2023-01-16T17:00:18.505110", "hasPart": [ { "@id": "atacseq.ga" @@ -72,7 +72,7 @@ "@id": "#galaxy" }, "url": "https://github.com/iwc-workflows/atacseq", - "version": "0.3" + "version": "0.4" }, { "@id": "#galaxy",