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Changelog

[0.4] 2024-12-16

Automatic update

  • toolshed.g2.bx.psu.edu/repos/bgruening/gfastats/gfastats/1.3.9+galaxy0 was updated to toolshed.g2.bx.psu.edu/repos/bgruening/gfastats/gfastats/1.3.9+galaxy1

[0.3] 2024-11-11

Automatic update

  • toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/2.0 was updated to toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/2.1
  • toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.11+galaxy1 was updated to toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.24.1+galaxy0
  • toolshed.g2.bx.psu.edu/repos/bgruening/hifiasm/hifiasm/0.19.9+galaxy0 was updated to toolshed.g2.bx.psu.edu/repos/bgruening/hifiasm/hifiasm/0.20.0+galaxy0
  • toolshed.g2.bx.psu.edu/repos/bgruening/gfastats/gfastats/1.3.6+galaxy0 was updated to toolshed.g2.bx.psu.edu/repos/bgruening/gfastats/gfastats/1.3.9+galaxy0
  • toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.5.0+galaxy0 was updated to toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.8.0+galaxy0
  • toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cut_tool/9.3+galaxy1 was updated to toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cut_tool/9.3+galaxy2

[0.2] 2024-08-12

Added

  • Workflow report

Changed

  • Expose the Busco lineage database parameter
  • Fix a bug happening when merging assembly statistics : The presence of the '#' character caused the tables to join incorrectly, and the numbers did not match the metrics

[0.1.8] 2024-07-22

Automatic update

  • toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.9+galaxy0 was updated to toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.9+galaxy1

[0.1.7] 2024-07-15

Automatic update

  • toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.8+galaxy1 was updated to toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.9+galaxy0
  • toolshed.g2.bx.psu.edu/repos/bgruening/hifiasm/hifiasm/0.19.8+galaxy1 was updated to toolshed.g2.bx.psu.edu/repos/bgruening/hifiasm/hifiasm/0.19.9+galaxy0

[0.1.6] 2024-05-20

Automatic update

  • toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.8+galaxy0 was updated to toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.8+galaxy1

[0.1.5] 2024-05-06

Automatic update

  • toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_grep_tool/9.3+galaxy0 was updated to toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_grep_tool/9.3+galaxy1
  • toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_line/9.3+galaxy0 was updated to toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_line/9.3+galaxy1
  • toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.3+galaxy0 was updated to toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.3+galaxy1
  • toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cat/9.3+galaxy0 was updated to toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cat/9.3+galaxy1
  • toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_easyjoin_tool/9.3+galaxy0 was updated to toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_easyjoin_tool/9.3+galaxy1

[0.1.4] 2024-04-22

Added

  • Add Homozygous Read coverage parameter and calculation
  • Expose Lineage parameter

Automatic update

  • toolshed.g2.bx.psu.edu/repos/iuc/merqury/merqury/1.3+galaxy3 was updated to toolshed.g2.bx.psu.edu/repos/iuc/merqury/merqury/1.3+galaxy4
  • toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.7+galaxy0 was updated to toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.8+galaxy0

[0.1.3] 2024-03-25

Manual update

  • Add gff output to Busco
  • Add histogram output to Merqury
  • Label subworkflows

Automatic update

  • toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_grep_tool/1.1.1 was updated to toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_grep_tool/9.3+galaxy0
  • toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_line/1.1.2 was updated to toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_line/9.3+galaxy0
  • toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/1.1.2 was updated to toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.3+galaxy0
  • toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sed_tool/1.1.1 was updated to toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sed_tool/9.3+galaxy0
  • toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cat/0.1.1 was updated to toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cat/9.3+galaxy0
  • toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.4+galaxy0 was updated to toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.7+galaxy0
  • toolshed.g2.bx.psu.edu/repos/bgruening/hifiasm/hifiasm/0.19.8+galaxy0 was updated to toolshed.g2.bx.psu.edu/repos/bgruening/hifiasm/hifiasm/0.19.8+galaxy1

[0.1.2] 2023-11-14

Automatic update

  • toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.0+galaxy1 was updated to toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.4+galaxy0
  • toolshed.g2.bx.psu.edu/repos/bgruening/hifiasm/hifiasm/0.16.1+galaxy4 was updated to toolshed.g2.bx.psu.edu/repos/bgruening/hifiasm/hifiasm/0.19.8+galaxy0
  • toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.3.2+galaxy0 was updated to toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.4.6+galaxy0
  • toolshed.g2.bx.psu.edu/repos/iuc/merqury/merqury/1.3+galaxy2 was updated to toolshed.g2.bx.psu.edu/repos/iuc/merqury/merqury/1.3+galaxy3
  • toolshed.g2.bx.psu.edu/repos/iuc/datamash_ops/datamash_ops/1.1.0+galaxy2 was updated to toolshed.g2.bx.psu.edu/repos/iuc/datamash_ops/datamash_ops/1.8+galaxy0
  • toolshed.g2.bx.psu.edu/repos/devteam/add_value/addValue/1.0.0 was updated to toolshed.g2.bx.psu.edu/repos/devteam/add_value/addValue/1.0.1
  • toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_point/ggplot2_point/3.4.0+galaxy0 was updated to toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_point/ggplot2_point/3.4.0+galaxy1

[0.1.1] 2023-11-20

  • Fix author in dockstore

[0.1] - 2023-09-27

Creation of workflow for Trio assembly.