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Assembly fails during scheme identification because the score of the best scheme cannot be compared to the absent runner up's score.
[2024-04-25T12:25:08+0100 viridian INFO] (scheme_id) Finished analysing amplicon schemes vs reads
[2024-04-25T12:25:08+0100 viridian INFO] Amplicon scheme that reads best match to: my-scheme, with score 617, and (second best)/best = None
[2024-04-25T12:25:08+0100 viridian ERROR] (second best scheme score) / (best score) is None, which is more than the required maximum 0.5
[2024-04-25T12:25:08+0100 viridian ERROR] Stopping pipeline
[2024-04-25T12:25:08+0100 viridian ERROR] Error during stage: 4/10 Detect amplicon scheme
Fortunately this can be worked around with --force_amp_scheme {scheme_name} (thanks @martinghunt )
The text was updated successfully, but these errors were encountered:
When running Viridian 1.2.0 supplying a TSV containing a single custom scheme:
Assembly fails during scheme identification because the score of the best scheme cannot be compared to the absent runner up's score.
Fortunately this can be worked around with
--force_amp_scheme {scheme_name}
(thanks @martinghunt )The text was updated successfully, but these errors were encountered: