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Examples for NetCDF, HDF4, HDF5, TIFF, and OPeNDAP #5

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mmccarty opened this issue Apr 26, 2018 · 8 comments
Closed
3 tasks

Examples for NetCDF, HDF4, HDF5, TIFF, and OPeNDAP #5

mmccarty opened this issue Apr 26, 2018 · 8 comments

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@mmccarty
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A few simple example catalogs for these file types that:

  • Load data
  • Inspect metadata
  • Show a simple plot
@mmccarty mmccarty changed the title Examples for NetCDF, HDF5, and OPeNDAP Examples for HDF4, HDF5, TIFF, and OPeNDAP May 8, 2018
@mmccarty mmccarty changed the title Examples for HDF4, HDF5, TIFF, and OPeNDAP Examples for NetCDF, HDF4, HDF5, TIFF, and OPeNDAP May 8, 2018
@jhamman
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jhamman commented May 11, 2018

xarray also supports backends that access grib, and zarr formats. Examples may want to include those formats as well.

@martindurant
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Yes, agree on GRIB (via PyNIO) and TIFF should be there too. We may not want to include opendap here, though, since that would need a remote data source.

@martindurant
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Except I notice PyNIO still isn't released for py3.

@jhamman
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jhamman commented May 15, 2018

Yes, NCAR/pynio#17 is still lingering. I have been using their dev release of the python3 code and it seems to be working. I wouldn't let this slow you down though. They'll have to get it done by the end of the year because xarray is dropping py2 support then.

@martindurant
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@jhamman , is loading via pynio compatible with the chunks= parameter, i.e., using with dask?

@martindurant
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(never mind, found a GRIB, tried it, and it works just fine)

@jhamman
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jhamman commented Aug 10, 2018

What is the status of intake-xarray and open-dap served datasets?

@martindurant
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Local files (netcdf, grib, tiff, zarr...) and remote (zarr only) datasets will be totally good.

As of #11 , intake should also be able to stream any of these formats, i.e., so that you can read netcdf remotely. The server isn't meant for production, however, and doubtless isn't any kind of performant - it's really meant as POC from a big data point of view.

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