mkdocs.yml

site_name: HPC Documentation

use_directory_urls: false
nav:
  - News: general/news.md
  - Quick Start: general/quick-start.md
  - UBELIX: general/ubelix-overview.md
  - Accounts and Access:
      - Accounts and Activation: getting-Started/account.md
      - Access: getting-Started/login-ssh.md
      - SSH customization: getting-Started/ssh-customization.md
  - Workspaces:
      - Overview: hpc-workspaces/workspaces.md
      - Software environment: hpc-workspaces/environment.md
      - Workspace management: hpc-workspaces/management.md
  - SLURM / Job handling:
      - Partitions / QoS: slurm/partitions.md
      - Submitting jobs: slurm/submission.md
      - Monitoring Jobs: slurm/monitoring-jobs.md
      - Deleting Jobs: slurm/deleting-jobs.md
      - Array Jobs with Slurm: slurm/array-jobs.md
      - Job dependencies: slurm/dependencies.md
      - GPUs: slurm/gpus.md
      - Interactive Jobs: slurm/interactive-jobs.md
      - Investigating a Job Failure: slurm/investigating-job-failure.md
      - Checkpointing: slurm/checkpointing.md
      - Fair Share: slurm/fair-share.md
  - Software:
      - HPC software environment: software/hpc-modules.md
      - Installing Custom Software: software/installing-custom-software.md
      - EasyBuild: software/EasyBuild.md
      - Supported Applications:
          - Anaconda / Python: software/Anaconda.md
          - CUDA: software/CUDA.md
          - JupyterLab: software/JupyterLab.md
          - MATLAB: software/matlab.md
          - Parallel BZIP2: software/bzip2.md
          - ParaView: software/ParaView.md
          - R: software/r.md
          - Relion: software/relion.md
          - Singularity: software/singularity.md
          - Terminal Multiplexer (tmux): software/terminal-multiplexer-tmux.md
          - Visual Studio Code: software/VisualStudioCode.md
  - Storage:
      - Overview: file-system/filesystem-overview.md
      - Quota: file-system/quota.md
      - Moving files to and from the HPCs: file-system/file-transfer.md
      - Scratch: file-system/scratch.md
  - Costs and Investments: general/costs_investments.md
  - Support: general/support.md
  - FAQ: general/faq.md
  - Hall of Fame: general/halloffame.md
  - Code of Conduct: general/code-of-conduct.md

# Copyright footer
copyright: 'Copyright © University of Bern, IT Service Office'
# Link to repo
repo_name: 'hpc-unibe-ch/hpc-docs'
repo_url: 'https://github.com/hpc-unibe-ch/hpc-unibe-ch.github.io'
edit_uri: 'edit/main/docs'

# Configuration
theme:
  name: material

extra_css:
  - 'stylesheets/unibe.css'

plugins:
  - git-revision-date
  - search

# See https://python-markdown.github.io/extensions/ and
# See https://github.com/Python-Markdown/markdown/wiki/Third-Party-Extensions#Bundles
#     https://facelessuser.github.io/pymdown-extensions/
markdown_extensions:
  - abbr
  - admonition
  - attr_list
  - def_list
  - footnotes
  - codehilite:
      guess_lang: false
  - pymdownx.superfences
  - pymdownx.tabbed:
      alternate_style: true
  - pymdownx.tasklist:
      custom_checkbox: true
  - sane_lists
  - smarty
  - tables
  - toc

# Social links bottom right
extra:
  social:
    - icon: fontawesome/brands/github-alt
      link: https://github.com/hpc-unibe-ch