-
Notifications
You must be signed in to change notification settings - Fork 23
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Error installing #2
Comments
Hello, Sorry you're running into that installation error! A quick search on your failure message seems to suggest that it may not be specific to Symphony. It may be a Github server issue (dviraran/SingleR#18), or it may be an issue with the particular machine (gadenbuie/xaringanExtra#70). Would you be able to try it again in a few hours or on a different machine and let us know if you're still having the same issue? Thanks! |
Hey, I tried again and also on a different device, same issue. As suggested in gadenbuie/xaringanExtra#70 downloading a .zip file and running devtools::install_local at least started the installation but then I got errors when compiling the source code. It seem like it's a specific macOS issue with fortran (solved following privefl/bigstatsr#16 and a very similar issue to RcppCore/RcppArmadillo#262. I haven't figured out how to fix the last one yet but I'll post an update if I will. It's sort of odd because I did install Harmony without any issues. But anyway, thanks for the links! |
Installing the latest fortran from fxcoudert/gfortran-for-macOS and creating
solved the problem. |
Hi all,
I'm trying to install the package via
devtools::install_github("immunogenomics/symphony")
but I get the following output:Downloading GitHub repo immunogenomics/symphony@HEAD
Error in utils::download.file(url, path, method = method, quiet = quiet, :
download from 'https://api.github.com/repos/immunogenomics/symphony/tarball/HEAD' failed.
I updated devtools to the latest version and have harmony installed.
Here's my sessionInfo():
R version 4.0.3 (2020-10-10)
Platform: x86_64-apple-darwin17.0 (64-bit)
Running under: macOS Big Sur 10.16
Matrix products: default
LAPACK: /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRlapack.dylib
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] rstudioapi_0.13 magrittr_2.0.1 usethis_2.0.0
[4] devtools_2.3.1.9000 pkgload_1.1.0 R6_2.5.0
[7] rlang_0.4.10 fansi_0.4.1 tools_4.0.3
[10] pkgbuild_1.2.0 sessioninfo_1.1.1 cli_2.2.0
[13] withr_2.3.0 ellipsis_0.3.1 remotes_2.2.0
[16] assertthat_0.2.1 digest_0.6.27 rprojroot_2.0.2
[19] lifecycle_0.2.0 crayon_1.3.4 processx_3.4.5
[22] purrr_0.3.4 callr_3.5.1 fs_1.5.0
[25] ps_1.5.0 curl_4.3 testthat_3.0.1
[28] memoise_1.1.0 glue_1.4.2 compiler_4.0.3
[31] desc_1.2.0 prettyunits_1.1.1
Would appreciate any help!
The text was updated successfully, but these errors were encountered: