fix: `adjacent_vertices()` and `incident_edges()` are now correct if the `"return.vs.es"` option is `FALSE` #1606

stibu81 · 2024-11-29T16:34:12Z

The problem is that in adjacent_vertices(), 1 is only added to the vertices if return.vs.es is TRUE.

aviator-app · 2024-11-29T16:34:15Z

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szhorvat · 2024-11-29T17:12:50Z

@krlmlr @Antonov548 It should be checked if this bug affects the auto-generated interfaces, and if yes, fixed there as well.

krlmlr · 2024-11-30T16:33:25Z

Thanks for the issue and the PR, good catch!

I checked all instances of "return.vs.es", only incident_edges() seems to have the same problem. Would you like to fix also there, and add a test for each fix?

stibu81 · 2024-11-30T16:49:49Z

Yes, I'm happy to do that. Sorry, I wasn't aware of incident_edges().

I thought about adding a test, but did not do that because I could not find any existing tests for adjacent_vertices(). (And the same holds true for incident_edges().) Is this correct or am I missing something? If there are no dedicated files already, I propose adding the tests to test-interface.R is this the correct place?

In addition, I would suggest a test for neighbors() with return.vs.es set to FALSE. OK?

krlmlr · 2024-11-30T16:56:32Z

Thanks! Yes, our tests are a bit sparse, adding the tests you're suggesting to test-interface.R sounds right.

krlmlr · 2024-11-30T21:19:11Z

Thanks! Please open a new PR for the other changes.

krlmlr · 2024-12-02T19:40:59Z

@luukvdmeer: this breaks an assumption in sfnetworks. I don't have time to propose a PR today. Can you release an update on short notice? Thanks!

krlmlr · 2024-12-02T20:19:19Z

Adding @wlandau for drake and targets. I see two options:

Revert this fix here, push to CRAN, think about an orchestration strategy
Release the four packages quasi-simultaneously

Would the second option work for y'all? If not, no problem, I'll go with the first. Thanks!

krlmlr · 2024-12-02T20:20:07Z

Check results with the igraph release candidate:

Changes to worse in reverse depends:

Package: drake
Check: examples
New result: ERROR
  Running examples in ‘drake-Ex.R’ failed
  The error most likely occurred in:
  
  > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
  > ### Name: target
  > ### Title: Customize a target in 'drake_plan()'. *[Stable]*
  > ### Aliases: target
  > 
  > ### ** Examples
  > 
  > # Use target() to create your own custom columns in a drake plan.
  > # See ?triggers for more on triggers.
  > drake_plan(
  +   website_data = target(
  +     download_data("www.your_url.com"),
  +     trigger = "always",
  +     custom_column = 5
  +   ),
  +   analysis = analyze(website_data)
  + )
  # A tibble: 2 × 4
    target       command                           trigger       custom_column
    <chr>        <expr_lst>                        <expr_lst>            <dbl>
  1 website_data download_data("www.your_url.com") "always"                  5
  2 analysis     analyze(website_data)             NA_character_            NA
  > models <- c("glm", "hierarchical")
  > plan <- drake_plan(
  +   data = target(
  +     get_data(x),
  +     transform = map(x = c("simulated", "survey"))
  +   ),
  +   analysis = target(
  +     analyze_data(data, model),
  +     transform = cross(data, model = !!models, .id = c(x, model))
  +   ),
  +   summary = target(
  +     summarize_analysis(analysis),
  +     transform = map(analysis, .id = c(x, model))
  +   ),
  +   results = target(
  +     bind_rows(summary),
  +     transform = combine(summary, .by = data)
  +   )
  + )
  Error: A grouping variable for target summary is either undefined or improperly invoked. Details: https://books.ropensci.org/drake/static.html#grouping-variables
  Execution halted

Package: sfnetworks
Check: re-building of vignette outputs
New result: ERROR
  Error(s) in re-building vignettes:
    ...
  --- re-building ‘sfn01_structure.Rmd’ using rmarkdown
  ** Processing: /home/hornik/tmp/CRAN_recheck/sfnetworks.Rcheck/vign_test/sfnetworks/vignettes/sfn01_structure_files/figure-html/unnamed-chunk-5-1.png
  288x288 pixels, 8 bits/pixel, 247 colors in palette
  Reducing image to 8 bits/pixel, grayscale
  Input IDAT size = 3120 bytes
  Input file size = 3951 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 2663
    zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 2631
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 2631
  
  Output IDAT size = 2631 bytes (489 bytes decrease)
  Output file size = 2709 bytes (1242 bytes = 31.44% decrease)
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/sfnetworks.Rcheck/vign_test/sfnetworks/vignettes/sfn01_structure_files/figure-html/unnamed-chunk-5-2.png
  288x288 pixels, 8 bits/pixel, 256 colors in palette
  Reducing image to 8 bits/pixel, grayscale
  Input IDAT size = 3503 bytes
  Input file size = 4361 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 2852
    zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 2812
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 2812
  
  Output IDAT size = 2812 bytes (691 bytes decrease)
  Output file size = 2890 bytes (1471 bytes = 33.73% decrease)
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/sfnetworks.Rcheck/vign_test/sfnetworks/vignettes/sfn01_structure_files/figure-html/unnamed-chunk-7-1.png
  480x480 pixels, 8 bits/pixel, 256 colors in palette
  Reducing image to 8 bits/pixel, grayscale
  Input IDAT size = 34329 bytes
  Input file size = 35235 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 32352
    zc = 9  zm = 8  zs = 1  f = 0
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0		IDAT size = 31402
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 3  f = 0		IDAT size = 31402
  
  Output IDAT size = 31402 bytes (2927 bytes decrease)
  Output file size = 31480 bytes (3755 bytes = 10.66% decrease)
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/sfnetworks.Rcheck/vign_test/sfnetworks/vignettes/sfn01_structure_files/figure-html/unnamed-chunk-11-1.png
  480x480 pixels, 8 bits/pixel, 256 colors in palette
  Reducing image to 8 bits/pixel, grayscale
  Input IDAT size = 34329 bytes
  Input file size = 35235 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 32352
    zc = 9  zm = 8  zs = 1  f = 0
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0		IDAT size = 31402
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 3  f = 0		IDAT size = 31402
  
  Output IDAT size = 31402 bytes (2927 bytes decrease)
  Output file size = 31480 bytes (3755 bytes = 10.66% decrease)
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/sfnetworks.Rcheck/vign_test/sfnetworks/vignettes/sfn01_structure_files/figure-html/unnamed-chunk-12-1.png
  480x480 pixels, 8 bits/pixel, 256 colors in palette
  Reducing image to 8 bits/pixel, grayscale
  Input IDAT size = 37470 bytes
  Input file size = 38376 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 35260
    zc = 9  zm = 8  zs = 1  f = 0
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 35260
  
  Output IDAT size = 35260 bytes (2210 bytes decrease)
  Output file size = 35338 bytes (3038 bytes = 7.92% decrease)
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/sfnetworks.Rcheck/vign_test/sfnetworks/vignettes/sfn01_structure_files/figure-html/unnamed-chunk-13-1.png
  480x480 pixels, 3x8 bits/pixel, RGB
  Input IDAT size = 103169 bytes
  Input file size = 103391 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 79771
    zc = 9  zm = 8  zs = 1  f = 0
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 79771
  
  Output IDAT size = 79771 bytes (23398 bytes decrease)
  Output file size = 79849 bytes (23542 bytes = 22.77% decrease)
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/sfnetworks.Rcheck/vign_test/sfnetworks/vignettes/sfn01_structure_files/figure-html/unnamed-chunk-15-1.png
  288x288 pixels, 8 bits/pixel, 256 colors in palette
  Reducing image to 8 bits/pixel, grayscale
  Input IDAT size = 13577 bytes
  Input file size = 14447 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 12485
    zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 12389
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 12389
  
  Output IDAT size = 12389 bytes (1188 bytes decrease)
  Output file size = 12467 bytes (1980 bytes = 13.71% decrease)
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/sfnetworks.Rcheck/vign_test/sfnetworks/vignettes/sfn01_structure_files/figure-html/unnamed-chunk-15-2.png
  288x288 pixels, 3x8 bits/pixel, RGB
  Input IDAT size = 63559 bytes
  Input file size = 63721 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 54313
    zc = 9  zm = 8  zs = 1  f = 0
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 54313
  
  Output IDAT size = 54313 bytes (9246 bytes decrease)
  Output file size = 54391 bytes (9330 bytes = 14.64% decrease)
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/sfnetworks.Rcheck/vign_test/sfnetworks/vignettes/sfn01_structure_files/figure-html/unnamed-chunk-25-1.png
  288x288 pixels, 3x8 bits/pixel, RGB
  Input IDAT size = 5823 bytes
  Input file size = 5901 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 4690
    zc = 9  zm = 8  zs = 1  f = 0
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 4690
  
  Output IDAT size = 4690 bytes (1133 bytes decrease)
  Output file size = 4768 bytes (1133 bytes = 19.20% decrease)
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/sfnetworks.Rcheck/vign_test/sfnetworks/vignettes/sfn01_structure_files/figure-html/unnamed-chunk-25-2.png
  288x288 pixels, 3x8 bits/pixel, RGB
  Input IDAT size = 5591 bytes
  Input file size = 5669 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 4407
    zc = 9  zm = 8  zs = 1  f = 0
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 4407
  
  Output IDAT size = 4407 bytes (1184 bytes decrease)
  Output file size = 4485 bytes (1184 bytes = 20.89% decrease)
  
  --- finished re-building ‘sfn01_structure.Rmd’
  
  --- re-building ‘sfn02_preprocess_clean.Rmd’ using rmarkdown
  ** Processing: /home/hornik/tmp/CRAN_recheck/sfnetworks.Rcheck/vign_test/sfnetworks/vignettes/sfn02_preprocess_clean_files/figure-html/unnamed-chunk-5-1.png
  480x480 pixels, 3x8 bits/pixel, RGB
  Input IDAT size = 6368 bytes
  Input file size = 6446 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 4994
    zc = 9  zm = 8  zs = 1  f = 0
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 4994
  
  Output IDAT size = 4994 bytes (1374 bytes decrease)
  Output file size = 5072 bytes (1374 bytes = 21.32% decrease)
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/sfnetworks.Rcheck/vign_test/sfnetworks/vignettes/sfn02_preprocess_clean_files/figure-html/unnamed-chunk-6-1.png
  288x288 pixels, 3x8 bits/pixel, RGB
  Input IDAT size = 3867 bytes
  Input file size = 3945 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 3111
    zc = 9  zm = 8  zs = 1  f = 0
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 3111
  
  Output IDAT size = 3111 bytes (756 bytes decrease)
  Output file size = 3189 bytes (756 bytes = 19.16% decrease)
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/sfnetworks.Rcheck/vign_test/sfnetworks/vignettes/sfn02_preprocess_clean_files/figure-html/unnamed-chunk-6-2.png
  288x288 pixels, 3x8 bits/pixel, RGB
  Input IDAT size = 3587 bytes
  Input file size = 3665 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 2862
    zc = 9  zm = 8  zs = 1  f = 0
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 2862
  
  Output IDAT size = 2862 bytes (725 bytes decrease)
  Output file size = 2940 bytes (725 bytes = 19.78% decrease)
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/sfnetworks.Rcheck/vign_test/sfnetworks/vignettes/sfn02_preprocess_clean_files/figure-html/unnamed-chunk-7-1.png
  288x288 pixels, 3x8 bits/pixel, RGB
  Input IDAT size = 3867 bytes
  Input file size = 3945 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 3111
    zc = 9  zm = 8  zs = 1  f = 0
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 3111
  
  Output IDAT size = 3111 bytes (756 bytes decrease)
  Output file size = 3189 bytes (756 bytes = 19.16% decrease)
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/sfnetworks.Rcheck/vign_test/sfnetworks/vignettes/sfn02_preprocess_clean_files/figure-html/unnamed-chunk-7-2.png
  288x288 pixels, 3x8 bits/pixel, RGB
  Input IDAT size = 3434 bytes
  Input file size = 3512 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 2814
    zc = 9  zm = 8  zs = 1  f = 0
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 2814
  
  Output IDAT size = 2814 bytes (620 bytes decrease)
  Output file size = 2892 bytes (620 bytes = 17.65% decrease)
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/sfnetworks.Rcheck/vign_test/sfnetworks/vignettes/sfn02_preprocess_clean_files/figure-html/unnamed-chunk-8-1.png
  288x288 pixels, 3x8 bits/pixel, RGB
  Input IDAT size = 3903 bytes
  Input file size = 3981 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 3126
    zc = 9  zm = 8  zs = 1  f = 0
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 3126
  
  Output IDAT size = 3126 bytes (777 bytes decrease)
  Output file size = 3204 bytes (777 bytes = 19.52% decrease)
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/sfnetworks.Rcheck/vign_test/sfnetworks/vignettes/sfn02_preprocess_clean_files/figure-html/unnamed-chunk-8-2.png
  288x288 pixels, 3x8 bits/pixel, RGB
  Input IDAT size = 3403 bytes
  Input file size = 3481 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 2798
    zc = 9  zm = 8  zs = 1  f = 0
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 2798
  
  Output IDAT size = 2798 bytes (605 bytes decrease)
  Output file size = 2876 bytes (605 bytes = 17.38% decrease)
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/sfnetworks.Rcheck/vign_test/sfnetworks/vignettes/sfn02_preprocess_clean_files/figure-html/unnamed-chunk-9-1.png
  288x288 pixels, 3x8 bits/pixel, RGB
  Input IDAT size = 3403 bytes
  Input file size = 3481 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 2798
    zc = 9  zm = 8  zs = 1  f = 0
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 2798
  
  Output IDAT size = 2798 bytes (605 bytes decrease)
  Output file size = 2876 bytes (605 bytes = 17.38% decrease)
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/sfnetworks.Rcheck/vign_test/sfnetworks/vignettes/sfn02_preprocess_clean_files/figure-html/unnamed-chunk-9-2.png
  288x288 pixels, 3x8 bits/pixel, RGB
  Input IDAT size = 3495 bytes
  Input file size = 3573 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 2919
    zc = 9  zm = 8  zs = 1  f = 0
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 2919
  
  Output IDAT size = 2919 bytes (576 bytes decrease)
  Output file size = 2997 bytes (576 bytes = 16.12% decrease)
  
  
  Quitting from lines 293-299 [unnamed-chunk-10] (sfn02_preprocess_clean.Rmd)
  Error: processing vignette 'sfn02_preprocess_clean.Rmd' failed with diagnostics:
  inherits(x, "sfc_MULTILINESTRING") is not TRUE
  --- failed re-building ‘sfn02_preprocess_clean.Rmd’
  
  --- re-building ‘sfn03_join_filter.Rmd’ using rmarkdown
  ** Processing: /home/hornik/tmp/CRAN_recheck/sfnetworks.Rcheck/vign_test/sfnetworks/vignettes/sfn03_join_filter_files/figure-html/unnamed-chunk-2-1.png
  288x288 pixels, 3x8 bits/pixel, RGB
  Input IDAT size = 30718 bytes
  Input file size = 30832 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 19948
    zc = 9  zm = 8  zs = 1  f = 0
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 19948
  
  Output IDAT size = 19948 bytes (10770 bytes decrease)
  Output file size = 20026 bytes (10806 bytes = 35.05% decrease)
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/sfnetworks.Rcheck/vign_test/sfnetworks/vignettes/sfn03_join_filter_files/figure-html/unnamed-chunk-2-2.png
  288x288 pixels, 8 bits/pixel, 256 colors in palette
  Reducing image to 8 bits/pixel, grayscale
  Input IDAT size = 14112 bytes
  Input file size = 14982 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 13145
    zc = 9  zm = 8  zs = 1  f = 0
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 13145
  
  Output IDAT size = 13145 bytes (967 bytes decrease)
  Output file size = 13223 bytes (1759 bytes = 11.74% decrease)
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/sfnetworks.Rcheck/vign_test/sfnetworks/vignettes/sfn03_join_filter_files/figure-html/unnamed-chunk-3-1.png
  288x288 pixels, 3x8 bits/pixel, RGB
  Input IDAT size = 30718 bytes
  Input file size = 30832 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 19948
    zc = 9  zm = 8  zs = 1  f = 0
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 19948
  
  Output IDAT size = 19948 bytes (10770 bytes decrease)
  Output file size = 20026 bytes (10806 bytes = 35.05% decrease)
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/sfnetworks.Rcheck/vign_test/sfnetworks/vignettes/sfn03_join_filter_files/figure-html/unnamed-chunk-3-2.png
  288x288 pixels, 8 bits/pixel, 256 colors in palette
  Reducing image to 8 bits/pixel, grayscale
  Input IDAT size = 15056 bytes
  Input file size = 15926 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 13991
    zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 13951
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0		IDAT size = 13827
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 3  f = 0		IDAT size = 13827
  
  Output IDAT size = 13827 bytes (1229 bytes decrease)
  Output file size = 13905 bytes (2021 bytes = 12.69% decrease)
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/sfnetworks.Rcheck/vign_test/sfnetworks/vignettes/sfn03_join_filter_files/figure-html/unnamed-chunk-4-1.png
  288x288 pixels, 3x8 bits/pixel, RGB
  Input IDAT size = 30718 bytes
  Input file size = 30832 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 19948
    zc = 9  zm = 8  zs = 1  f = 0
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 19948
  
  Output IDAT size = 19948 bytes (10770 bytes decrease)
  Output file size = 20026 bytes (10806 bytes = 35.05% decrease)
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/sfnetworks.Rcheck/vign_test/sfnetworks/vignettes/sfn03_join_filter_files/figure-html/unnamed-chunk-4-2.png
  288x288 pixels, 8 bits/pixel, 256 colors in palette
  Reducing image to 8 bits/pixel, grayscale
  Input IDAT size = 14338 bytes
  Input file size = 15208 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 13372
    zc = 9  zm = 8  zs = 1  f = 0
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 13372
  
  Output IDAT size = 13372 bytes (966 bytes decrease)
  Output file size = 13450 bytes (1758 bytes = 11.56% decrease)
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/sfnetworks.Rcheck/vign_test/sfnetworks/vignettes/sfn03_join_filter_files/figure-html/unnamed-chunk-5-1.png
  288x288 pixels, 8 bits/pixel, 124 colors in palette
  Input IDAT size = 12788 bytes
  Input file size = 13262 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 11772
    zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 11755
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 11755
  
  Output IDAT size = 11755 bytes (1033 bytes decrease)
  Output file size = 12217 bytes (1045 bytes = 7.88% decrease)
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/sfnetworks.Rcheck/vign_test/sfnetworks/vignettes/sfn03_join_filter_files/figure-html/unnamed-chunk-5-2.png
  288x288 pixels, 8 bits/pixel, 256 colors in palette
  Reducing image to 8 bits/pixel, grayscale
  Input IDAT size = 14406 bytes
  Input file size = 15276 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 13471
    zc = 9  zm = 8  zs = 1  f = 0
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 13471
  
  Output IDAT size = 13471 bytes (935 bytes decrease)
  Output file size = 13549 bytes (1727 bytes = 11.31% decrease)
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/sfnetworks.Rcheck/vign_test/sfnetworks/vignettes/sfn03_join_filter_files/figure-html/unnamed-chunk-6-1.png
  288x288 pixels, 3x8 bits/pixel, RGB
  Input IDAT size = 30718 bytes
  Input file size = 30832 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 19948
    zc = 9  zm = 8  zs = 1  f = 0
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 19948
  
  Output IDAT size = 19948 bytes (10770 bytes decrease)
  Output file size = 20026 bytes (10806 bytes = 35.05% decrease)
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/sfnetworks.Rcheck/vign_test/sfnetworks/vignettes/sfn03_join_filter_files/figure-html/unnamed-chunk-6-2.png
  288x288 pixels, 8 bits/pixel, 256 colors in palette
  Reducing image to 8 bits/pixel, grayscale
  Input IDAT size = 14338 bytes
  Input file size = 15208 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 13372
    zc = 9  zm = 8  zs = 1  f = 0
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 13372
  
  Output IDAT size = 13372 bytes (966 bytes decrease)
  Output file size = 13450 bytes (1758 bytes = 11.56% decrease)
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/sfnetworks.Rcheck/vign_test/sfnetworks/vignettes/sfn03_join_filter_files/figure-html/unnamed-chunk-9-1.png
  288x288 pixels, 8 bits/pixel, 161 colors in palette
  Input IDAT size = 13351 bytes
  Input file size = 13936 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 12078
    zc = 9  zm = 8  zs = 1  f = 0
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 12078
  
  Output IDAT size = 12078 bytes (1273 bytes decrease)
  Output file size = 12651 bytes (1285 bytes = 9.22% decrease)
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/sfnetworks.Rcheck/vign_test/sfnetworks/vignettes/sfn03_join_filter_files/figure-html/unnamed-chunk-9-2.png
  288x288 pixels, 8 bits/pixel, 248 colors in palette
  Reducing image to 8 bits/pixel, grayscale
  Input IDAT size = 13718 bytes
  Input file size = 14564 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 12666
    zc = 9  zm = 8  zs = 1  f = 0
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 12666
  
  Output IDAT size = 12666 bytes (1052 bytes decrease)
  Output file size = 12744 bytes (1820 bytes = 12.50% decrease)
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/sfnetworks.Rcheck/vign_test/sfnetworks/vignettes/sfn03_join_filter_files/figure-html/unnamed-chunk-10-1.png
  288x288 pixels, 3x8 bits/pixel, RGB
  Input IDAT size = 30718 bytes
  Input file size = 30832 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 19948
    zc = 9  zm = 8  zs = 1  f = 0
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 19948
  
  Output IDAT size = 19948 bytes (10770 bytes decrease)
  Output file size = 20026 bytes (10806 bytes = 35.05% decrease)
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/sfnetworks.Rcheck/vign_test/sfnetworks/vignettes/sfn03_join_filter_files/figure-html/unnamed-chunk-10-2.png
  288x288 pixels, 8 bits/pixel, 256 colors in palette
  Reducing image to 8 bits/pixel, grayscale
  Input IDAT size = 14164 bytes
  Input file size = 15034 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 13221
    zc = 9  zm = 8  zs = 1  f = 0
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 13221
  
  Output IDAT size = 13221 bytes (943 bytes decrease)
  Output file size = 13299 bytes (1735 bytes = 11.54% decrease)
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/sfnetworks.Rcheck/vign_test/sfnetworks/vignettes/sfn03_join_filter_files/figure-html/unnamed-chunk-11-1.png
  288x288 pixels, 3x8 bits/pixel, RGB
  Input IDAT size = 35727 bytes
  Input file size = 35853 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 23780
    zc = 9  zm = 8  zs = 1  f = 0
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 23780
  
  Output IDAT size = 23780 bytes (11947 bytes decrease)
  Output file size = 23858 bytes (11995 bytes = 33.46% decrease)
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/sfnetworks.Rcheck/vign_test/sfnetworks/vignettes/sfn03_join_filter_files/figure-html/unnamed-chunk-11-2.png
  288x288 pixels, 3x8 bits/pixel, RGB
  Input IDAT size = 41034 bytes
  Input file size = 41172 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 29995
    zc = 9  zm = 8  zs = 1  f = 0
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 29995
  
  Output IDAT size = 29995 bytes (11039 bytes decrease)
  Output file size = 30073 bytes (11099 bytes = 26.96% decrease)
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/sfnetworks.Rcheck/vign_test/sfnetworks/vignettes/sfn03_join_filter_files/figure-html/unnamed-chunk-13-1.png
  288x288 pixels, 8 bits/pixel, 235 colors in palette
  Input IDAT size = 1662 bytes
  Input file size = 2457 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 1324
    zc = 9  zm = 8  zs = 1  f = 0
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 1324
  
  Output IDAT size = 1324 bytes (338 bytes decrease)
  Output file size = 2119 bytes (338 bytes = 13.76% decrease)
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/sfnetworks.Rcheck/vign_test/sfnetworks/vignettes/sfn03_join_filter_files/figure-html/unnamed-chunk-13-2.png
  288x288 pixels, 8 bits/pixel, 136 colors in palette
  Input IDAT size = 1065 bytes
  Input file size = 1563 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 786
    zc = 9  zm = 8  zs = 1  f = 0
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 786
  
  Output IDAT size = 786 bytes (279 bytes decrease)
  Output file size = 1284 bytes (279 bytes = 17.85% decrease)
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/sfnetworks.Rcheck/vign_test/sfnetworks/vignettes/sfn03_join_filter_files/figure-html/unnamed-chunk-15-1.png
  288x288 pixels, 8 bits/pixel, 202 colors in palette
  Input IDAT size = 1401 bytes
  Input file size = 2097 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 1102
    zc = 9  zm = 8  zs = 1  f = 0
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 1102
  
  Output IDAT size = 1102 bytes (299 bytes decrease)
  Output file size = 1798 bytes (299 bytes = 14.26% decrease)
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/sfnetworks.Rcheck/vign_test/sfnetworks/vignettes/sfn03_join_filter_files/figure-html/unnamed-chunk-15-2.png
  288x288 pixels, 8 bits/pixel, 95 colors in palette
  Reducing image to 8 bits/pixel, grayscale
  Input IDAT size = 915 bytes
  Input file size = 1290 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 694
    zc = 9  zm = 8  zs = 1  f = 0
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 694
  
  Output IDAT size = 694 bytes (221 bytes decrease)
  Output file size = 772 bytes (518 bytes = 40.16% decrease)
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/sfnetworks.Rcheck/vign_test/sfnetworks/vignettes/sfn03_join_filter_files/figure-html/unnamed-chunk-16-1.png
  288x288 pixels, 3x8 bits/pixel, RGB
  Input IDAT size = 3749 bytes
  Input file size = 3827 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 2863
    zc = 9  zm = 8  zs = 1  f = 0
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 2863
  
  Output IDAT size = 2863 bytes (886 bytes decrease)
  Output file size = 2941 bytes (886 bytes = 23.15% decrease)
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/sfnetworks.Rcheck/vign_test/sfnetworks/vignettes/sfn03_join_filter_files/figure-html/unnamed-chunk-16-2.png
  288x288 pixels, 3x8 bits/pixel, RGB
  Input IDAT size = 3587 bytes
  Input file size = 3665 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 2679
    zc = 9  zm = 8  zs = 1  f = 0
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 2679
  
  Output IDAT size = 2679 bytes (908 bytes decrease)
  Output file size = 2757 bytes (908 bytes = 24.77% decrease)
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/sfnetworks.Rcheck/vign_test/sfnetworks/vignettes/sfn03_join_filter_files/figure-html/unnamed-chunk-18-1.png
  288x288 pixels, 8 bits/pixel, 174 colors in palette
  Reducing image to 8 bits/pixel, grayscale
  Input IDAT size = 1972 bytes
  Input file size = 2584 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 1629
    zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 1628
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 1628
  
  Output IDAT size = 1628 bytes (344 bytes decrease)
  Output file size = 1706 bytes (878 bytes = 33.98% decrease)
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/sfnetworks.Rcheck/vign_test/sfnetworks/vignettes/sfn03_join_filter_files/figure-html/unnamed-chunk-18-2.png
  288x288 pixels, 8 bits/pixel, 175 colors in palette
  Reducing image to 8 bits/pixel, grayscale
  Input IDAT size = 2039 bytes
  Input file size = 2654 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 1680
    zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 1679
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 1679
  
  Output IDAT size = 1679 bytes (360 bytes decrease)
  Output file size = 1757 bytes (897 bytes = 33.80% decrease)
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/sfnetworks.Rcheck/vign_test/sfnetworks/vignettes/sfn03_join_filter_files/figure-html/unnamed-chunk-19-1.png
  288x288 pixels, 8 bits/pixel, 48 colors in palette
  Input IDAT size = 946 bytes
  Input file size = 1180 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 766
    zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 760
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 760
  
  Output IDAT size = 760 bytes (186 bytes decrease)
  Output file size = 994 bytes (186 bytes = 15.76% decrease)
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/sfnetworks.Rcheck/vign_test/sfnetworks/vignettes/sfn03_join_filter_files/figure-html/unnamed-chunk-19-2.png
  288x288 pixels, 8 bits/pixel, 117 colors in palette
  Reducing image to 8 bits/pixel, grayscale
  Input IDAT size = 1109 bytes
  Input file size = 1550 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 858
    zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 854
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 854
  
  Output IDAT size = 854 bytes (255 bytes decrease)
  Output file size = 932 bytes (618 bytes = 39.87% decrease)
  
  --- finished re-building ‘sfn03_join_filter.Rmd’
  
  --- re-building ‘sfn04_routing.Rmd’ using rmarkdown
  ** Processing: /home/hornik/tmp/CRAN_recheck/sfnetworks.Rcheck/vign_test/sfnetworks/vignettes/sfn04_routing_files/figure-html/unnamed-chunk-2-1.png
  480x480 pixels, 3x8 bits/pixel, RGB
  Input IDAT size = 71653 bytes
  Input file size = 71827 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 46948
    zc = 9  zm = 8  zs = 1  f = 0
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 46948
  
  Output IDAT size = 46948 bytes (24705 bytes decrease)
  Output file size = 47026 bytes (24801 bytes = 34.53% decrease)
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/sfnetworks.Rcheck/vign_test/sfnetworks/vignettes/sfn04_routing_files/figure-html/unnamed-chunk-3-1.png
  480x480 pixels, 3x8 bits/pixel, RGB
  Input IDAT size = 71876 bytes
  Input file size = 72050 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 47123
    zc = 9  zm = 8  zs = 1  f = 0
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 47123
  
  Output IDAT size = 47123 bytes (24753 bytes decrease)
  Output file size = 47201 bytes (24849 bytes = 34.49% decrease)
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/sfnetworks.Rcheck/vign_test/sfnetworks/vignettes/sfn04_routing_files/figure-html/unnamed-chunk-4-1.png
  480x480 pixels, 3x8 bits/pixel, RGB
  Input IDAT size = 77998 bytes
  Input file size = 78184 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 71615
    zc = 9  zm = 8  zs = 1  f = 0
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 71615
  
  Output IDAT size = 71615 bytes (6383 bytes decrease)
  Output file size = 71693 bytes (6491 bytes = 8.30% decrease)
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/sfnetworks.Rcheck/vign_test/sfnetworks/vignettes/sfn04_routing_files/figure-html/unnamed-chunk-8-1.png
  480x480 pixels, 3x8 bits/pixel, RGB
  Input IDAT size = 89879 bytes
  Input file size = 90077 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 60520
    zc = 9  zm = 8  zs = 1  f = 0
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 60520
  
  Output IDAT size = 60520 bytes (29359 bytes decrease)
  Output file size = 60598 bytes (29479 bytes = 32.73% decrease)
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/sfnetworks.Rcheck/vign_test/sfnetworks/vignettes/sfn04_routing_files/figure-html/unnamed-chunk-12-1.png
  480x480 pixels, 3x8 bits/pixel, RGB
  Input IDAT size = 75581 bytes
  Input file size = 75767 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 50280
    zc = 9  zm = 8  zs = 1  f = 0
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 50280
  
  Output IDAT size = 50280 bytes (25301 bytes decrease)
  Output file size = 50358 bytes (25409 bytes = 33.54% decrease)
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/sfnetworks.Rcheck/vign_test/sfnetworks/vignettes/sfn04_routing_files/figure-html/unnamed-chunk-14-1.png
  480x480 pixels, 3x8 bits/pixel, RGB
  Input IDAT size = 84591 bytes
  Input file size = 84789 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 57640
    zc = 9  zm = 8  zs = 1  f = 0
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 57640
  
  Output IDAT size = 57640 bytes (26951 bytes decrease)
  Output file size = 57718 bytes (27071 bytes = 31.93% decrease)
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/sfnetworks.Rcheck/vign_test/sfnetworks/vignettes/sfn04_routing_files/figure-html/unnamed-chunk-15-1.png
  480x480 pixels, 3x8 bits/pixel, RGB
  Input IDAT size = 81137 bytes
  Input file size = 81323 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 58115
    zc = 9  zm = 8  zs = 1  f = 0
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 58115
  
  Output IDAT size = 58115 bytes (23022 bytes decrease)
  Output file size = 58193 bytes (23130 bytes = 28.44% decrease)
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/sfnetworks.Rcheck/vign_test/sfnetworks/vignettes/sfn04_routing_files/figure-html/unnamed-chunk-17-1.png
  480x480 pixels, 3x8 bits/pixel, RGB
  Input IDAT size = 24864 bytes
  Input file size = 24978 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 19742
    zc = 9  zm = 8  zs = 1  f = 0
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 19742
  
  Output IDAT size = 19742 bytes (5122 bytes decrease)
  Output file size = 19820 bytes (5158 bytes = 20.65% decrease)
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/sfnetworks.Rcheck/vign_test/sfnetworks/vignettes/sfn04_routing_files/figure-html/unnamed-chunk-19-1.png
  288x288 pixels, 3x8 bits/pixel, RGB
  Input IDAT size = 43036 bytes
  Input file size = 43174 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 32610
    zc = 9  zm = 8  zs = 1  f = 0
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 32610
  
  Output IDAT size = 32610 bytes (10426 bytes decrease)
  Output file size = 32688 bytes (10486 bytes = 24.29% decrease)
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/sfnetworks.Rcheck/vign_test/sfnetworks/vignettes/sfn04_routing_files/figure-html/unnamed-chunk-19-2.png
  288x288 pixels, 3x8 bits/pixel, RGB
  Input IDAT size = 42790 bytes
  Input file size = 42928 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 32406
    zc = 9  zm = 8  zs = 1  f = 0
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 32406
  
  Output IDAT size = 32406 bytes (10384 bytes decrease)
  Output file size = 32484 bytes (10444 bytes = 24.33% decrease)
  
  --- finished re-building ‘sfn04_routing.Rmd’
  
  --- re-building ‘sfn05_morphers.Rmd’ using rmarkdown
  ** Processing: /home/hornik/tmp/CRAN_recheck/sfnetworks.Rcheck/vign_test/sfnetworks/vignettes/sfn05_morphers_files/figure-html/unnamed-chunk-3-1.png
  480x480 pixels, 3x8 bits/pixel, RGB
  Input IDAT size = 64227 bytes
  Input file size = 64389 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 45125
    zc = 9  zm = 8  zs = 1  f = 0
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 45125
  
  Output IDAT size = 45125 bytes (19102 bytes decrease)
  Output file size = 45203 bytes (19186 bytes = 29.80% decrease)
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/sfnetworks.Rcheck/vign_test/sfnetworks/vignettes/sfn05_morphers_files/figure-html/unnamed-chunk-4-1.png
  288x288 pixels, 3x8 bits/pixel, RGB
  Input IDAT size = 35020 bytes
  Input file size = 35146 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 24295
    zc = 9  zm = 8  zs = 1  f = 0
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 24295
  
  Output IDAT size = 24295 bytes (10725 bytes decrease)
  Output file size = 24373 bytes (10773 bytes = 30.65% decrease)
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/sfnetworks.Rcheck/vign_test/sfnetworks/vignettes/sfn05_morphers_files/figure-html/unnamed-chunk-4-2.png
  288x288 pixels, 3x8 bits/pixel, RGB
  Input IDAT size = 34939 bytes
  Input file size = 35065 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 22830
    zc = 9  zm = 8  zs = 1  f = 0
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 22830
  
  Output IDAT size = 22830 bytes (12109 bytes decrease)
  Output file size = 22908 bytes (12157 bytes = 34.67% decrease)
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/sfnetworks.Rcheck/vign_test/sfnetworks/vignettes/sfn05_morphers_files/figure-html/unnamed-chunk-7-1.png
  288x288 pixels, 3x8 bits/pixel, RGB
  Input IDAT size = 43035 bytes
  Input file size = 43173 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 32428
    zc = 9  zm = 8  zs = 1  f = 0
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 32428
  
  Output IDAT size = 32428 bytes (10607 bytes decrease)
  Output file size = 32506 bytes (10667 bytes = 24.71% decrease)
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/sfnetworks.Rcheck/vign_test/sfnetworks/vignettes/sfn05_morphers_files/figure-html/unnamed-chunk-7-2.png
  288x288 pixels, 3x8 bits/pixel, RGB
  Input IDAT size = 21452 bytes
  Input file size = 21554 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 16982
    zc = 9  zm = 8  zs = 1  f = 0
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 16982
  
  Output IDAT size = 16982 bytes (4470 bytes decrease)
  Output file size = 17060 bytes (4494 bytes = 20.85% decrease)
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/sfnetworks.Rcheck/vign_test/sfnetworks/vignettes/sfn05_morphers_files/figure-html/unnamed-chunk-9-1.png
  288x288 pixels, 8 bits/pixel, 256 colors in palette
  Reducing image to 8 bits/pixel, grayscale
  Input IDAT size = 13184 bytes
  Input file size = 14054 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 12071
    zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 11992
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 11992
  
  Output IDAT size = 11992 bytes (1192 bytes decrease)
  Output file size = 12070 bytes (1984 bytes = 14.12% decrease)
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/sfnetworks.Rcheck/vign_test/sfnetworks/vignettes/sfn05_morphers_files/figure-html/unnamed-chunk-9-2.png
  288x288 pixels, 8 bits/pixel, 256 colors in palette
  Reducing image to 8 bits/pixel, grayscale
  Input IDAT size = 15889 bytes
  Input file size = 16759 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 14764
    zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 14680
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 14680
  
  Output IDAT size = 14680 bytes (1209 bytes decrease)
  Output file size = 14758 bytes (2001 bytes = 11.94% decrease)
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/sfnetworks.Rcheck/vign_test/sfnetworks/vignettes/sfn05_morphers_files/figure-html/unnamed-chunk-10-1.png
  480x480 pixels, 3x8 bits/pixel, RGB
  Input IDAT size = 73141 bytes
  Input file size = 73315 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 48937
    zc = 9  zm = 8  zs = 1  f = 0
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 48937
  
  Output IDAT size = 48937 bytes (24204 bytes decrease)
  Output file size = 49015 bytes (24300 bytes = 33.14% decrease)
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/sfnetworks.Rcheck/vign_test/sfnetworks/vignettes/sfn05_morphers_files/figure-html/unnamed-chunk-12-1.png
  480x480 pixels, 3x8 bits/pixel, RGB
  Input IDAT size = 66822 bytes
  Input file size = 66996 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 44219
    zc = 9  zm = 8  zs = 1  f = 0
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 44219
  
  Output IDAT size = 44219 bytes (22603 bytes decrease)
  Output file size = 44297 bytes (22699 bytes = 33.88% decrease)
  
  
  Quitting from lines 312-317 [unnamed-chunk-14] (sfn05_morphers.Rmd)
  Error: processing vignette 'sfn05_morphers.Rmd' failed with diagnostics:
  Invalid vertex name(s)
  --- failed re-building ‘sfn05_morphers.Rmd’
  
  SUMMARY: processing the following files failed:
    ‘sfn02_preprocess_clean.Rmd’ ‘sfn05_morphers.Rmd’
  
  Error: Vignette re-building failed.
  Execution halted

Package: sfnetworks
Check: tests
New result: ERROR
    Running ‘testthat.R’ [16s/16s]
  Running the tests in ‘tests/testthat.R’ failed.
  Complete output:
    > library(testthat)
    > library(sfnetworks)
    > 
    > test_check("sfnetworks")
    [ FAIL 1 | WARN 1 | SKIP 0 | PASS 167 ]
    
    ══ Failed tests ════════════════════════════════════════════════════════════════
    ── Error ('test_morphers.R:90:1'): (code run outside of `test_that()`) ─────────
    Error in `st_line_merge.sfc(st_combine(orig_geoms))`: inherits(x, "sfc_MULTILINESTRING") is not TRUE
    Backtrace:
         ▆
      1. ├─tidygraph::convert(net_l, to_spatial_smooth) at test_morphers.R:90:1
      2. └─tidygraph:::convert.tbl_graph(net_l, to_spatial_smooth)
      3.   ├─tidygraph::crystallise(morph(.data, .f, ...))
      4.   ├─tidygraph::morph(.data, .f, ...)
      5.   └─sfnetworks:::morph.sfnetwork(.data, .f, ...)
      6.     └─base::tryCatch(...)
      7.       └─base (local) tryCatchList(expr, classes, parentenv, handlers)
      8.         └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
      9.           └─value[[3L]](cond)
     10.             └─base::tryCatch(morph(as_tbl_graph(.data), ...), error = function(e2) stop(e1))
     11.               └─base (local) tryCatchList(expr, classes, parentenv, handlers)
     12.                 └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
     13.                   └─value[[3L]](cond)
    
    [ FAIL 1 | WARN 1 | SKIP 0 | PASS 167 ]
    Error: Test failures
    Execution halted

Package: targets
Check: tests
New result: ERROR
    Running ‘testthat.R’ [40s/49s]
  Running the tests in ‘tests/testthat.R’ failed.
  Complete output:
    > Sys.setenv(PROCESSX_NOTIFY_OLD_SIGCHLD = "true")
    > library(testthat)
    > library(targets)
    
    Attaching package: 'targets'
    
    The following object is masked from 'package:testthat':
    
        matches
    
    > test_check("targets", reporter = ProgressReporter$new())
    ✔ | F W  S  OK | Context
    
    ⠏ |          0 | class_active                                                   
    ⠦ |          7 | class_active                                                   
    ⠏ |         20 | class_active                                                   
    ✔ |         21 | class_active
    
    ⠏ |          0 | class_auto                                                     
    ⠋ |      1   0 | class_auto                                                     
    ✔ |      2   2 | class_auto
    
    ⠏ |          0 | class_aws                                                      
    ⠧ |          8 | class_aws                                                      
    ⠇ |      2  17 | class_aws                                                      
    ✔ |      3  20 | class_aws
    
    ⠏ |          0 | class_aws_file                                                 
    ✔ |      6   2 | class_aws_file
    
    ⠏ |          0 | class_backoff                                                  
    ✔ |         21 | class_backoff
    
    ⠏ |          0 | class_branch                                                   
    ⠋ |         11 | class_branch                                                   
    ⠹ |         13 | class_branch                                                   
    ✔ |         29 | class_branch
    
    ⠏ |          0 | class_bud                                                      
    ⠼ |          5 | class_bud                                                      
    ⠙ |         12 | class_bud                                                      
    ✔ |         20 | class_bud
    
    ⠏ |          0 | class_build                                                    
    ⠸ |      1  13 | class_build                                                    
    ⠸ |      4  20 | class_build                                                    
    ⠋ |      4  37 | class_build                                                    
    ✔ |      7  40 | class_build
    
    ⠏ |          0 | class_builder                                                  
    ⠏ |      2   8 | class_builder                                                  
    ⠧ |      7  11 | class_builder                                                  
    ⠴ |     15  11 | class_builder                                                  
    ⠋ |     18  13 | class_builder                                                  
    ⠴ |     18  18 | class_builder                                                  
    ⠴ |     23  23 | class_builder                                                  
    ⠹ |     30  23 | class_builder                                                  
    ✔ |     30  23 | class_builder
    
    ⠏ |          0 | class_clustermq                                                
    ⠧ |      8   0 | class_clustermq                                                
    ✔ |     10   0 | class_clustermq
    
    ⠏ |          0 | class_command                                                  
    ⠏ |         10 | class_command                                                  
    ⠦ |         17 | class_command                                                  
    ⠙ |         22 | class_command                                                  
    ✔ |         23 | class_command
    
    ⠏ |          0 | class_counter                                                  
    ⠦ |          7 | class_counter                                                  
    ⠇ |         19 | class_counter                                                  
    ⠋ |         31 | class_counter                                                  
    ✔ |         33 | class_counter
    
    ⠏ |          0 | class_crew                                                     
    ⠋ |          1 | class_crew                                                     
    ⠹ |          3 | class_crew                                                     
    ⠦ |      1   6 | class_crew                                                     
    ✔ |      4   6 | class_crew [5.6s]
    
    ⠏ |          0 | class_cue                                                      
    ⠹ |          3 | class_cue                                                      
    ⠼ |          5 | class_cue                                                      
    ⠦ |          7 | class_cue                                                      
    ⠇ |          9 | class_cue                                                      
    ⠋ |         11 | class_cue                                                      
    ⠹ |         13 | class_cue                                                      
    ⠴ |         16 | class_cue                                                      
    ⠇ |         19 | class_cue                                                      
    ⠏ |         20 | class_cue                                                      
    ⠋ |         21 | class_cue                                                      
    ⠹ |         23 | class_cue                                                      
    ⠸ |         24 | class_cue                                                      
    ⠦ |         27 | class_cue                                                      
    ⠏ |         30 | class_cue                                                      
    ⠙ |         32 | class_cue                                                      
    ⠼ |         35 | class_cue                                                      
    ⠦ |         37 | class_cue                                                      
    ⠧ |         38 | class_cue                                                      
    ⠏ |         40 | class_cue                                                      
    ⠹ |         43 | class_cue                                                      
    ⠴ |         46 | class_cue                                                      
    ⠇ |         49 | class_cue                                                      
    ⠙ |         52 | class_cue                                                      
    ⠼ |         55 | class_cue                                                      
    ⠴ |         56 | class_cue                                                      
    ⠧ |         58 | class_cue                                                      
    ⠏ |         60 | class_cue                                                      
    ✔ |         62 | class_cue [5.6s]
    
    ⠏ |          0 | class_database                                                 
    ⠏ |         10 | class_database                                                 
    ⠙ |      1  21 | class_database                                                 
    ⠏ |      1  29 | class_database                                                 
    ⠧ |      1  47 | class_database                                                 
    ⠹ |      1  52 | class_database                                                 
    ⠋ |      1  60 | class_database                                                 
    ⠙ |      1  61 | class_database                                                 
    ⠼ |      1  64 | class_database                                                 
    ⠦ |      1  76 | class_database                                                 
    ⠼ |      1  84 | class_database                                                 
    ⠋ |      1  90 | class_database                                                 
    ⠋ |      2  99 | class_database                                                 
    ⠹ |      2 111 | class_database                                                 
    ✔ |      2 122 | class_database [2.5s]
    
    ⠏ |          0 | class_database_aws                                             
    ✔ |          1 | class_database_aws
    
    ⠏ |          0 | class_database_gcp                                             
    ⠋ |          1 | class_database_gcp                                             
    ✔ |          1 | class_database_gcp
    
    ⠏ |          0 | class_dynamic                                                  
    ⠴ |          6 | class_dynamic                                                  
    ⠸ |         14 | class_dynamic                                                  
    ✔ |         15 | class_dynamic
    
    ⠏ |          0 | class_feather                                                  
    ⠇ |      9   0 | class_feather                                                  
    ✔ |     12   0 | class_feather
    
    ⠏ |          0 | class_file                                                     
    ⠴ |          6 | class_file                                                     
    ⠧ |         18 | class_file                                                     
    ⠧ |         38 | class_file                                                     
    ⠸ |         54 | class_file                                                     
    ⠼ |         75 | class_file                                                     
    ⠇ |         89 | class_file                                                     
    ⠴ |        106 | class_file                                                     
    ⠧ |      1 117 | class_file                                                     
    ⠙ |      1 121 | class_file                                                     
    ✔ |      1 124 | class_file [1.0s]
    
    ⠏ |          0 | class_frames                                                   
    ⠸ |         14 | class_frames                                                   
    ✔ |         20 | class_frames
    
    ⠏ |          0 | class_fst                                                      
    ⠸ |          4 | class_fst                                                      
    ⠦ |          7 | class_fst                                                      
    ⠧ |          8 | class_fst                                                      
    ✔ |         12 | class_fst
    
    ⠏ |          0 | class_fst_dt                                                   
    ⠼ |          5 | class_fst_dt                                                   
    ⠏ |      1   9 | class_fst_dt                                                   
    ✔ |      1   9 | class_fst_dt
    
    ⠏ |          0 | class_fst_tbl                                                  
    ⠴ |          6 | class_fst_tbl                                                  
    ⠦ |          7 | class_fst_tbl                                                  
    ✔ |         11 | class_fst_tbl
    
    ⠏ |          0 | class_future                                                   
    ⠦ |      6   1 | class_future                                                   
    ✔ |      8   2 | class_future
    
    ⠏ |          0 | class_gcp                                                      
    ⠦ |      1   6 | class_gcp                                                      
    ✔ |      2   8 | class_gcp
    
    ⠏ |          0 | class_gcp_file                                                 
    ⠼ |          5 | class_gcp_file                                                 
    ✔ |          5 | class_gcp_file
    
    ⠏ |          0 | class_glimpse                                                  
    ⠸ |          4 | class_glimpse                                                  
    ⠧ |          8 | class_glimpse                                                  
    ⠙ | 1       11 | class_glimpse                                                  
    ⠼ | 3       12 | class_glimpse                                                  
    ✖ | 3       15 | class_glimpse
    ────────────────────────────────────────────────────────────────────────────────
    Failure ('test-class_glimpse.R:138:3'): glimpse$update() with names
    sort(net$vertices$name) (`actual`) not equal to sort(c("x", "y")) (`expected`).
    
    `actual`:   "y"    
    `expected`: "x" "y"
    
    Failure ('test-class_glimpse.R:139:3'): glimpse$update() with names
    net$edges$from (`actual`) not equal to "x" (`expected`).
    
    `actual`:      
    `expected`: "x"
    
    Failure ('test-class_glimpse.R:140:3'): glimpse$update() with names
    net$edges$to (`actual`) not equal to "y" (`expected`).
    
    `actual`:      
    `expected`: "y"
    ────────────────────────────────────────────────────────────────────────────────
    
    ⠏ |          0 | class_graph                                                    
    ⠧ |          8 | class_graph                                                    
    ⠦ |         17 | class_graph                                                    
    ⠴ |         26 | class_graph                                                    
    ⠼ |         35 | class_graph                                                    
    ⠸ |         44 | class_graph                                                    
    ⠼ |         55 | class_graph                                                    
    ⠏ |         70 | class_graph                                                    
    ✔ |         70 | class_graph
    
    ⠏ |          0 | class_group                                                    
    ⠇ |          9 | class_group                                                    
    ⠙ |         12 | class_group                                                    
    ✔ |         14 | class_group
    
    ⠏ |          0 | class_imports                                                  
    ⠏ |         10 | class_imports                                                  
    ⠙ |      1  21 | class_imports                                                  
    ⠦ |      1  26 | class_imports                                                  
    ⠇ |      1  28 | class_imports                                                  
    ⠋ |      1  30 | class_imports                                                  
    ⠙ |      1  31 | class_imports                                                  
    ⠹ |      1  32 | class_imports                                                  
    ⠸ |      1  33 | class_imports                                                  
    ✔ |      1  34 | class_imports [2.5s]
    
    ⠏ |          0 | class_inspection                                               
    ⠴ |          6 | class_inspection                                               
    ⠇ |          9 | class_inspection                                               
    ⠋ |         11 | class_inspection                                               
    ⠹ |         13 | class_inspection                                               
    ⠙ |         22 | class_inspection                                               
    ⠸ |         24 | class_inspection                                               
    ⠦ |         27 | class_inspection                                               
    ⠏ | 1       29 | class_inspection                                               
    ⠹ | 3       30 | class_inspection                                               
    ⠼ | 3       32 | class_inspection                                               
    ✖ | 3       36 | class_inspection [1.7s]
    ────────────────────────────────────────────────────────────────────────────────
    Failure ('test-class_inspection.R:357:3'): inspection$update() with names
    sort(net$vertices$name) (`actual`) not equal to sort(c("x", "y")) (`expected`).
    
    `actual`:   "y"    
    `expected`: "x" "y"
    
    Failure ('test-class_inspection.R:358:3'): inspection$update() with names
    net$edges$from (`actual`) not equal to "x" (`expected`).
    
    `actual`:      
    `expected`: "x"
    
    Failure ('test-class_inspection.R:359:3'): inspection$update() with names
    net$edges$to (`actual`) not equal to "y" (`expected`).
    
    `actual`:      
    `expected`: "y"
    ────────────────────────────────────────────────────────────────────────────────
    
    ⠏ |          0 | class_inventory                                                
    ⠹ |         13 | class_inventory                                                
    ✔ |         21 | class_inventory
    
    ⠏ |          0 | class_junction                                                 
    ⠧ |      1   7 | class_junction                                                 
    ✔ |      1  11 | class_junction
    
    ⠏ |          0 | class_keras                                                    
    ✔ |      5   0 | class_keras
    
    ⠏ |          0 | class_list                                                     
    ⠴ |          6 | class_list                                                     
    ✔ |          9 | class_list
    
    ⠏ |          0 | class_local                                                    
    ⠹ |          3 | class_local                                                    
    ⠙ |         12 | class_local                                                    
    ⠴ | 1       15 | class_local                                                    
    ⠦ | 1       16 | class_local                                                    
    ✖ | 1       16 | class_local
    ────────────────────────────────────────────────────────────────────────────────
    Error ('test-class_local.R:51:3'): can run on a subset of targets
    Error: object 'data1' not found
    Backtrace:
         ▆
      1. └─local$run() at test-class_local.R:51:3
      2.   └─self$process_next()
      3.     └─self$process_target(self$scheduler$queue$dequeue())
      4.       └─self$run_target(target)
      5.         ├─targets:::target_conclude(...)
      6.         └─targets:::target_conclude.tar_builder(...)
      7.           └─targets:::builder_error(target, pipeline, scheduler, meta)
      8.             └─targets:::builder_handle_error(target, pipeline, scheduler, meta)
      9.               └─targets:::builder_error_exit(target, pipeline, scheduler, meta)
     10.                 └─targets::tar_throw_run(target$metrics$error, class = target$metrics$error_class)
     11.                   └─targets::tar_error(...)
     12.                     └─rlang::abort(message = message, class = class, call = tar_envir_base)
    ────────────────────────────────────────────────────────────────────────────────
    
    ⠏ |          0 | class_lookup                                                   
    ⠇ |         19 | class_lookup                                                   
    ⠴ |         36 | class_lookup                                                   
    ⠴ |         56 | class_lookup                                                   
    ⠧ |         78 | class_lookup                                                   
    ⠴ |        106 | class_lookup                                                   
    ⠏ |        130 | class_lookup                                                   
    ⠙ |        162 | class_lookup                                                   
    ✔ |        172 | class_lookup
    
    ⠏ |          0 | class_mermaid                                                  
    ⠹ |          3 | class_mermaid                                                  
    ⠧ |          8 | class_mermaid                                                  
    ⠴ |         16 | class_mermaid                                                  
    ⠦ |         27 | class_mermaid                                                  
    ⠼ |         35 | class_mermaid                                                  
    ⠴ |         36 | class_mermaid                                                  
    ✔ |         36 | class_mermaid
    
    ⠏ |          0 | class_meta                                                     
    ⠙ |         12 | class_meta                                                     
    ⠼ |         25 | class_meta                                                     
    ⠸ |         34 | class_meta                                                     
    ⠇ |         39 | class_meta                                                     
    ⠏ |         40 | class_meta                                                     
    ⠼ |         45 | class_meta                                                     
    ⠇ |         49 | class_meta                                                     
    ⠸ |         54 | class_meta                                                     
    ⠼ |         55 | class_meta                                                     
    ⠏ |         60 | class_meta                                                     
    ✔ |         60 | class_meta [1.6s]
    
    ⠏ |          0 | class_metrics                                                  
    ⠦ |          7 | class_metrics                                                  
    ⠋ |         11 | class_metrics                                                  
    ✔ |         11 | class_metrics
    
    ⠏ |          0 | class_null                                                     
    ✔ |      1   1 | class_null
    
    ⠏ |          0 | class_options                                                  
    ⠇ |          9 | class_options                                                  
    ⠧ |         28 | class_options                                                  
    ⠧ |         38 | class_options                                                  
    ⠦ |         47 | class_options                                                  
    ⠴ |         56 | class_options                                                  
    ⠴ |         66 | class_options                                                  
    ⠼ |         75 | class_options                                                  
    ⠼ |         85 | class_options                                                  
    ⠹ |         93 | class_options                                                  
    ⠸ |        104 | class_options                                                  
    ⠹ |        113 | class_options                                                  
    ⠹ |        123 | class_options                                                  
    ⠙ |        132 | class_options                                                  
    ⠙ |        142 | class_options                                                  
    ✔ |      1 149 | class_options [1.6s]
    
    ⠏ |          0 | class_outdated                                                 
    ⠇ |      9   0 | class_outdated                                                 
    ⠼ |     14   1 | class_outdated                                                 
    ✔ |     14   1 | class_outdated
    
    ⠏ |          0 | class_parallel                                                 
    ⠼ |          5 | class_parallel                                                 
    ⠏ |         10 | class_parallel                                                 
    ⠇ |         19 | class_parallel                                                 
    ⠦ |         27 | class_parallel                                                 
    ⠼ |         35 | class_parallel                                                 
    ⠼ |         45 | class_parallel                                                 
    ⠙ |         52 | class_parallel                                                 
    ✔ |         59 | class_parallel
    
    ⠏ |          0 | class_parquet                                                  
    ✔ |     12   0 | class_parquet
    
    ⠏ |          0 | class_pattern                                                  
    ⠼ |          5 | class_pattern                                                  
    ⠙ |         12 | class_pattern                                                  
    ⠸ |         14 | class_pattern                                                  
    ⠴ |         16 | class_pattern                                                  
    ⠏ |         20 | class_pattern                                                  
    ⠴ |         26 | class_pattern                                                  
    ⠋ |         31 | class_pattern                                                  
    ⠙ |         52 | class_pattern                                                  
    ⠇ |         69 | class_pattern                                                  
    ⠹ |         73 | class_pattern                                                  
    ⠸ |         74 | class_pattern                                                  
    ⠇ |         79 | class_pattern                                                  
    ⠦ |         97 | class_pattern                                                  
    ⠇ |         99 | class_pattern                                                  
    ⠋ |        101 | class_pattern                                                  
    ⠸ |        104 | class_pattern                                                  
    ⠧ |        108 | class_pattern                                                  
    ⠋ |        111 | class_pattern                                                  
    ⠦ |        117 | class_pattern                                                  
    ⠙ |        122 | class_pattern                                                  
    ⠼ |        135 | class_pattern                                                  
    ⠴ |        136 | class_pattern                                                  
    ⠦ |        137 | class_pattern                                                  
    ⠧ |        138 | class_pattern                                                  
    ⠇ |        139 | class_pattern                                                  
    ⠏ |        140 | class_pattern                                                  
    ⠸ |        144 | class_pattern                                                  
    ⠙ |        152 | class_pattern                                                  
    ⠸ | 1      153 | class_pattern                                                  
    ✖ | 1    1 155 | class_pattern [5.8s]
    ────────────────────────────────────────────────────────────────────────────────
    Error ('test-class_pattern.R:783:3'): bootstrap a pattern for a shortcut pattern and stem
    <tar_condition_validate/tar_condition_targets/tar_condition_run/rlang_error/error/condition>
    Error: targets::tar_make() error
        • tar_errored()
        • tar_meta(fields = any_of("error"), complete_only = TRUE)
        • tar_workspace()
        • tar_workspaces()
        • Debug: https://books.ropensci.org/targets/debugging.html
        • Help: https://books.ropensci.org/targets/help.html
        Target y tried to branch over x, which is illegal. Patterns must only branch over explicitly declared targets in the pipeline. Stems and patterns are fine, but you cannot branch over branches or global objects. Also, if you branch over a target with format = "file", then that target must also be a pattern.
        stop(x)
        .handleSimpleError(function (condition)  {     state$error <- build_mess...
        h(simpleError(msg, call))
    Backtrace:
        ▆
     1. └─targets::tar_make(names = c("y", "z"), shortcut = TRUE, callr_function = NULL) at test-class_pattern.R:783:3
     2.   └─targets:::callr_outer(...)
     3.     ├─targets:::if_any(...)
     4.     └─targets:::callr_error(traced_condition = out, fun = fun)
     5.       └─targets::tar_throw_run(message, class = class(traced_condition$condition))
     6.         └─targets::tar_error(...)
     7.           └─rlang::abort(message = message, class = class, call = tar_envir_base)
    ────────────────────────────────────────────────────────────────────────────────
    
    ⠏ |          0 | class_patternview                                              
    ⠋ |          1 | class_patternview                                              
    ⠙ |          2 | class_patternview                                              
    ⠹ |          3 | class_patternview                                              
    ⠼ |          5 | class_patternview                                              
    ✔ |          6 | class_patternview
    
    ⠏ |          0 | class_pipeline                                                 
    ⠙ |          2 | class_pipeline                                                 
    ⠸ |          4 | class_pipeline                                                 
    ⠇ |          9 | class_pipeline                                                 
    ⠸ |         14 | class_pipeline                                                 
    ⠋ |         21 | class_pipeline                                                 
    ⠇ |         29 | class_pipeline                                                 
    ⠋ | 2       29 | class_pipeline                                                 
    ⠹ | 2       41 | class_pipeline                                                 
    ⠙ | 2       50 | class_pipeline                                                 
    ⠹ | 2       51 | class_pipeline                                                 
    ⠦ | 2       55 | class_pipeline                                                 
    ⠋ | 2    1  58 | class_pipeline                                                 
    ⠙ | 2    1  59 | class_pipeline                                                 
    ⠹ | 2    1  60 | class_pipeline                                                 
    ✖ | 2    1  60 | class_pipeline [1.7s]
    ────────────────────────────────────────────────────────────────────────────────
    Error ('test-class_pipeline.R:170:3'): pipeline_prune_targets() with one name
    Error in `as_igraph_vs(graph, v)`: Invalid vertex names
    Backtrace:
        ▆
     1. └─targets:::pipeline_prune_targets(pipeline, "mins") at test-class_pipeline.R:170:3
     2.   └─targets:::upstream_vertices(graph = graph, from = names)
     3.     └─targets:::nbhd_vertices(...)
     4.       └─targets:::targets_adjacent_vertices(graph, v = from, mode = mode)
     5.         └─igraph::adjacent_vertices(graph = graph, v = v, mode = mode)
     6.           └─igraph:::as_igraph_vs(graph, v)
    
    Failure ('test-class_pipeline.R:181:3'): pipeline_prune_targets() with multiple names
    sort(out) (`actual`) not equal to sort(exp) (`expected`).
    
    `actual`:   "all"   "data2" "max1" "max2" "min1"
    `expected`: "data1" "data2"        "max2" "min1"
    ────────────────────────────────────────────────────────────────────────────────
    Maximum number of failures exceeded; quitting at end of file.
    ℹ Increase this number with (e.g.) `testthat::set_max_fails(Inf)` 
    
    ══ Results ═════════════════════════════════════════════════════════════════════
    Duration: 43.4 s
    
    ── Skipped tests (125) ─────────────────────────────────────────────────────────
    • On CRAN (125): 'test-class_auto.R:2:3', 'test-class_auto.R:25:3',
      'test-class_aws.R:70:3', 'test-class_aws.R:80:3', 'test-class_aws.R:122:3',
      'test-class_aws_file.R:2:3', 'test-class_aws_file.R:17:3',
      'test-class_aws_file.R:29:3', 'test-class_aws_file.R:44:3',
      'test-class_aws_file.R:61:3', 'test-class_aws_file.R:80:3',
      'test-class_build.R:32:3', 'test-class_build.R:40:3',
      'test-class_build.R:48:3', 'test-class_build.R:54:3',
      'test-class_build.R:92:3', 'test-class_build.R:110:3',
      'test-class_build.R:117:3', 'test-class_builder.R:25:3',
      'test-class_builder.R:41:3', 'test-class_builder.R:89:3',
      'test-class_builder.R:102:3', 'test-class_builder.R:121:3',
      'test-class_builder.R:133:3', 'test-class_builder.R:148:3',
      'test-class_builder.R:164:3', 'test-class_builder.R:185:3',
      'test-class_builder.R:210:3', 'test-class_builder.R:225:3',
      'test-class_builder.R:231:3', 'test-class_builder.R:290:3',
      'test-class_builder.R:316:3', 'test-class_builder.R:327:3',
      'test-class_builder.R:338:3', 'test-class_builder.R:350:3',
      'test-class_builder.R:378:3', 'test-class_builder.R:427:3',
      'test-class_builder.R:443:3', 'test-class_builder.R:465:3',
      'test-class_builder.R:473:3', 'test-class_builder.R:501:3',
      'test-class_builder.R:517:3', 'test-class_builder.R:526:3',
      'test-class_builder.R:560:3', 'test-class_builder.R:592:3',
      'test-class_builder.R:638:3', 'test-class_builder.R:674:3',
      'test-class_builder.R:712:3', 'test-class_clustermq.R:2:3',
      'test-class_clustermq.R:8:3', 'test-class_clustermq.R:34:3',
      'test-class_clustermq.R:64:3', 'test-class_clustermq.R:92:3',
      'test-class_clustermq.R:120:3', 'test-class_clustermq.R:154:3',
      'test-class_clustermq.R:195:3', 'test-class_clustermq.R:249:3',
      'test-class_clustermq.R:273:3', 'test-class_crew.R:92:3',
      'test-class_crew.R:171:3', 'test-class_crew.R:222:3',
      'test-class_crew.R:273:3', 'test-class_database.R:40:3',
      'test-class_database.R:495:3', 'test-class_feather.R:2:3',
      'test-class_feather.R:32:3', 'test-class_feather.R:50:3',
      'test-class_feather.R:77:3', 'test-class_feather.R:85:3',
      'test-class_feather.R:96:3', 'test-class_feather.R:106:3',
      'test-class_feather.R:116:3', 'test-class_feather.R:124:3',
      'test-class_feather.R:131:3', 'test-class_feather.R:141:3',
      'test-class_feather.R:152:3', 'test-class_file.R:307:3',
      'test-class_fst_dt.R:92:3', 'test-class_future.R:7:3',
      'test-class_future.R:30:3', 'test-class_future.R:53:3',
      'test-class_future.R:75:3', 'test-class_future.R:97:3',
      'test-class_future.R:120:3', 'test-class_future.R:147:3',
      'test-class_future.R:195:3', 'test-class_gcp.R:18:3',
      'test-class_gcp.R:60:3', 'test-class_imports.R:33:3',
      'test-class_junction.R:10:3', 'test-class_keras.R:2:3',
      'test-class_keras.R:9:3', 'test-class_keras.R:16:3',
      'test-class_keras.R:22:3', 'test-class_keras.R:31:3',
      'test-class_null.R:9:3', 'test-class_options.R:483:3',
      'test-class_outdated.R:2:3', 'test-class_outdated.R:8:3',
      'test-class_outdated.R:14:3', 'test-class_outdated.R:21:3',
      'test-class_outdated.R:27:3', 'test-class_outdated.R:40:3',
      'test-class_outdated.R:61:3', 'test-class_outdated.R:81:3',
      'test-class_outdated.R:103:3', 'test-class_outdated.R:131:3',
      'test-class_outdated.R:158:3', 'test-class_outdated.R:183:3',
      'test-class_outdated.R:210:3', 'test-class_outdated.R:234:3',
      'test-class_parquet.R:2:3', 'test-class_parquet.R:32:3',
      'test-class_parquet.R:50:3', 'test-class_parquet.R:77:3',
      'test-class_parquet.R:85:3', 'test-class_parquet.R:96:3',
      'test-class_parquet.R:106:3', 'test-class_parquet.R:116:3',
      'test-class_parquet.R:124:3', 'test-class_parquet.R:131:3',
      'test-class_parquet.R:141:3', 'test-class_parquet.R:152:3',
      'test-class_pattern.R:808:3', 'test-class_pipeline.R:286:3'
    
    ── Failed tests ────────────────────────────────────────────────────────────────
    Failure ('test-class_glimpse.R:138:3'): glimpse$update() with names
    sort(net$vertices$name) (`actual`) not equal to sort(c("x", "y")) (`expected`).
    
    `actual`:   "y"    
    `expected`: "x" "y"
    
    Failure ('test-class_glimpse.R:139:3'): glimpse$update() with names
    net$edges$from (`actual`) not equal to "x" (`expected`).
    
    `actual`:      
    `expected`: "x"
    
    Failure ('test-class_glimpse.R:140:3'): glimpse$update() with names
    net$edges$to (`actual`) not equal to "y" (`expected`).
    
    `actual`:      
    `expected`: "y"
    
    Failure ('test-class_inspection.R:357:3'): inspection$update() with names
    sort(net$vertices$name) (`actual`) not equal to sort(c("x", "y")) (`expected`).
    
    `actual`:   "y"    
    `expected`: "x" "y"
    
    Failure ('test-class_inspection.R:358:3'): inspection$update() with names
    net$edges$from (`actual`) not equal to "x" (`expected`).
    
    `actual`:      
    `expected`: "x"
    
    Failure ('test-class_inspection.R:359:3'): inspection$update() with names
    net$edges$to (`actual`) not equal to "y" (`expected`).
    
    `actual`:      
    `expected`: "y"
    
    Error ('test-class_local.R:51:3'): can run on a subset of targets
    Error: object 'data1' not found
    Backtrace:
         ▆
      1. └─local$run() at test-class_local.R:51:3
      2.   └─self$process_next()
      3.     └─self$process_target(self$scheduler$queue$dequeue())
      4.       └─self$run_target(target)
      5.         ├─targets:::target_conclude(...)
      6.         └─targets:::target_conclude.tar_builder(...)
      7.           └─targets:::builder_error(target, pipeline, scheduler, meta)
      8.             └─targets:::builder_handle_error(target, pipeline, scheduler, meta)
      9.               └─targets:::builder_error_exit(target, pipeline, scheduler, meta)
     10.                 └─targets::tar_throw_run(target$metrics$error, class = target$metrics$error_class)
     11.                   └─targets::tar_error(...)
     12.                     └─rlang::abort(message = message, class = class, call = tar_envir_base)
    
    Error ('test-class_pattern.R:783:3'): bootstrap a pattern for a shortcut pattern and stem
    <tar_condition_validate/tar_condition_targets/tar_condition_run/rlang_error/error/condition>
    Error: targets::tar_make() error
        • tar_errored()
        • tar_meta(fields = any_of("error"), complete_only = TRUE)
        • tar_workspace()
        • tar_workspaces()
        • Debug: https://books.ropensci.org/targets/debugging.html
        • Help: https://books.ropensci.org/targets/help.html
        Target y tried to branch over x, which is illegal. Patterns must only branch over explicitly declared targets in the pipeline. Stems and patterns are fine, but you cannot branch over branches or global objects. Also, if you branch over a target with format = "file", then that target must also be a pattern.
        stop(x)
        .handleSimpleError(function (condition)  {     state$error <- build_mess...
        h(simpleError(msg, call))
    Backtrace:
        ▆
     1. └─targets::tar_make(names = c("y", "z"), shortcut = TRUE, callr_function = NULL) at test-class_pattern.R:783:3
     2.   └─targets:::callr_outer(...)
     3.     ├─targets:::if_any(...)
     4.     └─targets:::callr_error(traced_condition = out, fun = fun)
     5.       └─targets::tar_throw_run(message, class = class(traced_condition$condition))
     6.         └─targets::tar_error(...)
     7.           └─rlang::abort(message = message, class = class, call = tar_envir_base)
    
    Error ('test-class_pipeline.R:170:3'): pipeline_prune_targets() with one name
    Error in `as_igraph_vs(graph, v)`: Invalid vertex names
    Backtrace:
        ▆
     1. └─targets:::pipeline_prune_targets(pipeline, "mins") at test-class_pipeline.R:170:3
     2.   └─targets:::upstream_vertices(graph = graph, from = names)
     3.     └─targets:::nbhd_vertices(...)
     4.       └─targets:::targets_adjacent_vertices(graph, v = from, mode = mode)
     5.         └─igraph::adjacent_vertices(graph = graph, v = v, mode = mode)
     6.           └─igraph:::as_igraph_vs(graph, v)
    
    Failure ('test-class_pipeline.R:181:3'): pipeline_prune_targets() with multiple names
    sort(out) (`actual`) not equal to sort(exp) (`expected`).
    
    `actual`:   "all"   "data2" "max1" "max2" "min1"
    `expected`: "data1" "data2"        "max2" "min1"
    
    [ FAIL 10 | WARN 0 | SKIP 125 | PASS 1568 ]
    ══ Terminated early ════════════════════════════════════════════════════════════
    Error: Test failures
    Execution halted

stibu81 · 2024-12-02T20:45:31Z

Anything I can do to help?

krlmlr · 2024-12-02T20:50:20Z

Thanks, Stefan. This depends on the course of action we agree on.

stibu81 · 2024-12-02T20:51:49Z

OK, just let me know.

krlmlr changed the title ~~fix: fix adjacent_vertices() being off by 1 if return.vs.es is FALSE~~ fix: adjacent_vertices() and incident_edges() are now correct if the "return.vs.es" option is FALSE Nov 30, 2024

fix: fix adjacent_vertices() being off by 1 if return.vs.es is FALSE

da770a0

krlmlr force-pushed the fix_adjacent_vertices branch from 2ec45c2 to da770a0 Compare November 30, 2024 21:18

krlmlr enabled auto-merge (squash) November 30, 2024 21:19

krlmlr merged commit 1d38d60 into igraph:main Nov 30, 2024
17 checks passed

stibu81 deleted the fix_adjacent_vertices branch December 1, 2024 09:14

krlmlr mentioned this pull request Dec 2, 2024

fix: Remove correction for off-by-one error in igraph ropensci/targets#1389

Closed

stibu81 mentioned this pull request Dec 3, 2024

Some functions that return vertex or edge sequences ignore the value of the option return.vs.es #1614

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fix: `adjacent_vertices()` and `incident_edges()` are now correct if the `"return.vs.es"` option is `FALSE` #1606

fix: `adjacent_vertices()` and `incident_edges()` are now correct if the `"return.vs.es"` option is `FALSE` #1606

stibu81 commented Nov 29, 2024

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krlmlr commented Dec 2, 2024

stibu81 commented Dec 2, 2024

fix: adjacent_vertices() and incident_edges() are now correct if the "return.vs.es" option is FALSE #1606

fix: adjacent_vertices() and incident_edges() are now correct if the "return.vs.es" option is FALSE #1606

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stibu81 commented Dec 2, 2024

fix: `adjacent_vertices()` and `incident_edges()` are now correct if the `"return.vs.es"` option is `FALSE` #1606

fix: `adjacent_vertices()` and `incident_edges()` are now correct if the `"return.vs.es"` option is `FALSE` #1606

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