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Bad file descriptor #18

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xiekunwhy opened this issue Apr 14, 2022 · 1 comment
Open

Bad file descriptor #18

xiekunwhy opened this issue Apr 14, 2022 · 1 comment

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@xiekunwhy
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Hi,

When I use pblat, I always get following errors (both github and biconda version):

Bad file descriptor
Write error to .psl

what's wrong?
here is my command line
pblat -t=dnax -q=prot -threads=6 -mask=lower -minIdentity=81 -minScore=15 -noHead Op-f.msksoft.fa merge.okay.aa.0001.fa merge.okay.aa.0001.psl

Best,
Kun

@icebert
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icebert commented Apr 14, 2022

Maybe it's due to the system setting but I'm not sure. You can try on another machine. If it still doesn't work, please let me know.

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