From b6cb8019401bd4c60ce27613804a6436edd4e322 Mon Sep 17 00:00:00 2001
From: kevinrue Page not found (404)
Then, we pass the BiocFileCache
object and the two
custom functions defined above to the
-iSEEindex::iSEEindex()
function, to create an iSEE
+iSEEindex::iSEEindex()
function, to create an iSEE
application that incorporates a landing page offering users the choice
of data sets and initial configurations fetched by the custom
functions.
iSEEindex
Reproducibility
-The iSEEindex
-package (Rue-Albrecht, 2022) was made possible thanks to:
+The iSEEindex
+package (Rue-Albrecht and Marini, 2024) was made possible thanks to:
-- R (R Core Team, 2023)
+- R (R Core Team, 2024)
-
-BiocStyle
+BiocStyle
(Oleś, 2023)
-
knitr (Xie,
@@ -274,7 +274,7 @@
Reproducibilitytestthat
(Wickham, 2011)
-This package was developed using biocthis.
+This package was developed using biocthis.
Code for creating the vignette
## Create the vignette
@@ -285,155 +285,156 @@ Reproducibilitylibrary("knitr")
knit("iSEEindex.Rmd", tangle = TRUE)
Date the vignette was generated.
-#> [1] "2023-07-06 20:02:04 UTC"
+#> [1] "2024-02-22 12:57:18 UTC"
Wallclock time spent generating the vignette.
-#> Time difference of 8.62 secs
+#> Time difference of 7.624 secs
R
session information.
#> ─ Session info ───────────────────────────────────────────────────────────────────────────────────
#> setting value
-#> version R version 4.3.1 (2023-06-16)
-#> os Ubuntu 22.04.2 LTS
+#> version R Under development (unstable) (2024-02-19 r85946)
+#> os Ubuntu 22.04.3 LTS
#> system x86_64, linux-gnu
#> ui X11
#> language en
#> collate en_US.UTF-8
#> ctype en_US.UTF-8
#> tz UTC
-#> date 2023-07-06
+#> date 2024-02-22
#> pandoc 3.1.1 @ /usr/local/bin/ (via rmarkdown)
#>
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+#> stringr 1.5.1 2023-11-14 [2] CRAN (R 4.4.0)
+#> SummarizedExperiment * 1.33.3 2024-01-23 [1] Bioconductor 3.19 (R 4.4.0)
+#> systemfonts 1.0.5 2023-10-09 [2] CRAN (R 4.4.0)
+#> textshaping 0.3.7 2023-10-09 [2] CRAN (R 4.4.0)
+#> tibble 3.2.1 2023-03-20 [2] CRAN (R 4.4.0)
+#> tidyselect 1.2.0 2022-10-10 [1] CRAN (R 4.4.0)
+#> timechange 0.3.0 2024-01-18 [1] CRAN (R 4.4.0)
+#> triebeard 0.4.1 2023-03-04 [1] CRAN (R 4.4.0)
+#> urltools 1.7.3 2019-04-14 [1] CRAN (R 4.4.0)
+#> utf8 1.2.4 2023-10-22 [2] CRAN (R 4.4.0)
+#> vctrs 0.6.5 2023-12-01 [2] CRAN (R 4.4.0)
+#> vipor 0.4.7 2023-12-18 [1] CRAN (R 4.4.0)
+#> viridisLite 0.4.2 2023-05-02 [1] CRAN (R 4.4.0)
+#> xfun 0.42 2024-02-08 [2] CRAN (R 4.4.0)
+#> xml2 1.3.6 2023-12-04 [2] CRAN (R 4.4.0)
+#> xtable 1.8-4 2019-04-21 [2] CRAN (R 4.4.0)
+#> XVector 0.43.1 2024-01-10 [1] Bioconductor 3.19 (R 4.4.0)
+#> yaml 2.3.8 2023-12-11 [2] CRAN (R 4.4.0)
+#> zlibbioc 1.49.0 2023-10-24 [1] Bioconductor
#>
#> [1] /__w/_temp/Library
#> [2] /usr/local/lib/R/site-library
@@ -444,7 +445,7 @@ Reproducibility
Bibliography
-This vignette was generated using BiocStyle
+
This vignette was generated using BiocStyle
(Oleś, 2023) with knitr (Xie,
2023) and rmarkdown
(Allaire, Xie, Dervieux et al., 2023) running behind the scenes.
@@ -453,7 +454,7 @@ Bibliography[1]
J. Allaire, Y. Xie, C. Dervieux, et al. rmarkdown: Dynamic Documents
-for R. R package version 2.23. 2023. URL:
+for R. R package version 2.25. 2023. URL:
https://github.com/rstudio/rmarkdown.
@@ -466,23 +467,23 @@
Bibliography[3]
A. Oleś. BiocStyle: Standard styles for vignettes and other
-Bioconductor documents. R package version 2.28.0. 2023. DOI:
+Bioconductor documents. R package version 2.31.0. 2023. DOI:
10.18129/B9.bioc.BiocStyle.
URL:
https://bioconductor.org/packages/BiocStyle.
-[4]
+[4]
R Core Team. R: A Language and Environment for Statistical
Computing. R Foundation for Statistical Computing. Vienna, Austria,
-2023. URL:
+2024. URL:
https://www.R-project.org/.
-[5]
-K. Rue-Albrecht. iSEEindex: iSEE extension for a landing page to a
-custom collection of data sets. R package version 0.99.13. 2022.
-URL:
+[5]
+K. Rue-Albrecht and F. Marini. iSEEindex: iSEE extension for a
+landing page to a custom collection of data sets. R package version
+1.1.1. 2024. URL:
https://github.com/iSEE/iSEEindex.
@@ -500,7 +501,7 @@
Bibliography[8]
Y. Xie. knitr: A General-Purpose Package for Dynamic Report
-Generation in R. R package version 1.43. 2023. URL:
+Generation in R. R package version 1.45. 2023. URL:
https://yihui.org/knitr/.
@@ -519,7 +520,7 @@ Bibliography
-Developed by Kevin Rue-Albrecht, Denali Therapeutics.
+Developed by Kevin Rue-Albrecht, Federico Marini, Denali Therapeutics.
diff --git a/articles/index.html b/articles/index.html
index f3a5f85..54e53dd 100644
--- a/articles/index.html
+++ b/articles/index.html
@@ -17,7 +17,7 @@
@@ -78,7 +78,7 @@
All vignettes
- Developed by Kevin Rue-Albrecht, Denali Therapeutics.
+ Developed by Kevin Rue-Albrecht, Federico Marini, Denali Therapeutics.
diff --git a/articles/resources.html b/articles/resources.html
index 1e690bf..153ae46 100644
--- a/articles/resources.html
+++ b/articles/resources.html
@@ -34,7 +34,7 @@
@@ -93,7 +93,7 @@
Kevin
Oxford
kevin.rue-albrecht@imm.ox.ac.uk
- 6 July 2023
+ 22 February 2024
Source: vignettes/resources.Rmd
resources.Rmd
@@ -108,34 +108,34 @@ iSEEindex resources
Overview
-iSEEindex
imports data sets and initial app configurations from files. Each of
those files is represented by a Uniform Resource Identifier (URI) in the
lists of metadata returned by the functions supplied to the
FUN.datasets
and FUN.initial
arguments of
iSEEindex()
.
-iSEEindex
requires each URI to contain a scheme component (Wikipedia
),
to identify the type of resource and invoke the associated method for
accessing it.
-This system allows iSEEindex
+
This system allows iSEEindex
users to use both standard and custom schemes in the URI of their
resources, to fetch files from virtually any logical or physical
resource, local or remote.
-In this vignette, we describe the implementation of iSEEindex
+
In this vignette, we describe the implementation of iSEEindex
resources, using built-in classes of resources as examples.
Implementation
-Given a scheme <scheme>
, iSEEindex
+
Given a scheme <scheme>
, iSEEindex
automatically attempts to create an object of class
iSEEindex<Scheme>Resource
that contains the class
iSEEindexResource
. For instance, the scheme
https
produces an object of class
iSEEindexHttpsResource
.
-iSEEindex
provides a range of built-in iSEEindexResource
sub-classes,
described in dedicated sections below.
The raw value of the URI (including the scheme component) is always
@@ -145,9 +145,9 @@
Implementationprecache().
On first use, precache()
processes the raw value of the
URI, downloads the resource file locally using custom code if necessary,
-caches the file using BiocFileCache,
+caches the file using BiocFileCache,
and returns the path to the cached file.
-In subsequent uses, BiocFileCache
+
In subsequent uses, BiocFileCache
is used to fetch the cached file directly.
@@ -172,10 +172,10 @@ Structure
Caching
-The BiocFileCache
+
The BiocFileCache
package can handle HTTPS perfectly well.
In this instance, the precache()
function has no other
-job than to cache the file located at the given URI using BiocFileCache.
+job than to cache the file located at the given URI using BiocFileCache.
@@ -197,12 +197,12 @@ Structure
Caching
-Now, while the BiocFileCache
+
Now, while the BiocFileCache
package can perfectly well handle local files, it does not know how to
deal with the custom scheme localhost
.
In this instance, the precache()
function has for only
job to remove the localhost://
prefix from the URI, and
-cache the file located at the resulting file path using BiocFileCache.
+cache the file located at the resulting file path using BiocFileCache.
@@ -228,12 +228,12 @@ CachingInternet
-Assigned Numbers Authority (IANA). As such, the BiocFileCache
+Assigned Numbers Authority (IANA). As such, the BiocFileCache
package cannot possibly know how to handle that custom scheme.
In this instance, the precache()
function has the job to
remove the rcall://
prefix from the URI, evaluate the
remainder of the URI as R code, and cache the file located at the
-resulting file path using BiocFileCache.
+resulting file path using BiocFileCache.
@@ -255,23 +255,23 @@ StructureCaching
Now, while the scheme s3
is recognised by the AWS Command Line Interface, the
-BiocFileCache
+BiocFileCache
package does not know how to deal with it.
In this instance, the precache()
function has the job to
parse the URI for information that is passed to the paws.storage
-package to download the file, which is then cached using BiocFileCache.
+package to download the file, which is then cached using BiocFileCache.
Reproducibility
-The iSEEindex
-package (Rue-Albrecht, 2022) was made possible thanks to:
+The iSEEindex
+package (Rue-Albrecht and Marini, 2024) was made possible thanks to:
-- R (R Core Team, 2023)
+- R (R Core Team, 2024)
-
-BiocStyle
+BiocStyle
(Oleś, 2023)
-
knitr (Xie,
@@ -290,7 +290,7 @@
Reproducibilitytestthat
(Wickham, 2011)
-This package was developed using biocthis.
+This package was developed using biocthis.
Code for creating the vignette
## Create the vignette
@@ -301,71 +301,70 @@ Reproducibilitylibrary("knitr")
knit("resources.Rmd", tangle = TRUE)
Date the vignette was generated.
-#> [1] "2023-07-06 20:02:07 UTC"
+#> [1] "2024-02-22 12:57:20 UTC"
Wallclock time spent generating the vignette.
-#> Time difference of 0.627 secs
+#> Time difference of 0.528 secs
R
session information.
#> ─ Session info ───────────────────────────────────────────────────────────────────────────────────
#> setting value
-#> version R version 4.3.1 (2023-06-16)
-#> os Ubuntu 22.04.2 LTS
+#> version R Under development (unstable) (2024-02-19 r85946)
+#> os Ubuntu 22.04.3 LTS
#> system x86_64, linux-gnu
#> ui X11
#> language en
#> collate en_US.UTF-8
#> ctype en_US.UTF-8
#> tz UTC
-#> date 2023-07-06
+#> date 2024-02-22
#> pandoc 3.1.1 @ /usr/local/bin/ (via rmarkdown)
#>
#> ─ Packages ───────────────────────────────────────────────────────────────────────────────────────
#> package * version date (UTC) lib source
-#> backports 1.4.1 2021-12-13 [1] CRAN (R 4.3.1)
-#> bibtex 0.5.1 2023-01-26 [1] CRAN (R 4.3.1)
-#> BiocManager 1.30.21 2023-06-10 [2] CRAN (R 4.3.1)
-#> BiocStyle * 2.28.0 2023-04-25 [1] Bioconductor
-#> bookdown 0.34 2023-05-09 [1] CRAN (R 4.3.1)
-#> bslib 0.5.0 2023-06-09 [2] CRAN (R 4.3.1)
-#> cachem 1.0.8 2023-05-01 [2] CRAN (R 4.3.1)
-#> cli 3.6.1 2023-03-23 [2] CRAN (R 4.3.1)
-#> desc 1.4.2 2022-09-08 [2] CRAN (R 4.3.1)
-#> digest 0.6.32 2023-06-26 [2] CRAN (R 4.3.1)
-#> evaluate 0.21 2023-05-05 [2] CRAN (R 4.3.1)
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-#> fs 1.6.2 2023-04-25 [2] CRAN (R 4.3.1)
-#> generics 0.1.3 2022-07-05 [1] CRAN (R 4.3.1)
-#> glue 1.6.2 2022-02-24 [2] CRAN (R 4.3.1)
-#> htmltools 0.5.5 2023-03-23 [2] CRAN (R 4.3.1)
-#> httr 1.4.6 2023-05-08 [2] CRAN (R 4.3.1)
-#> jquerylib 0.1.4 2021-04-26 [2] CRAN (R 4.3.1)
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-#> memoise 2.0.1 2021-11-26 [2] CRAN (R 4.3.1)
-#> pkgdown 2.0.7 2022-12-14 [2] CRAN (R 4.3.1)
-#> plyr 1.8.8 2022-11-11 [1] CRAN (R 4.3.1)
-#> purrr 1.0.1 2023-01-10 [2] CRAN (R 4.3.1)
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-#> rmarkdown 2.23 2023-07-01 [1] CRAN (R 4.3.1)
-#> rprojroot 2.0.3 2022-04-02 [2] CRAN (R 4.3.1)
-#> sass 0.4.6 2023-05-03 [2] CRAN (R 4.3.1)
-#> sessioninfo * 1.2.2 2021-12-06 [2] CRAN (R 4.3.1)
-#> stringi 1.7.12 2023-01-11 [2] CRAN (R 4.3.1)
-#> stringr 1.5.0 2022-12-02 [2] CRAN (R 4.3.1)
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-#> vctrs 0.6.3 2023-06-14 [2] CRAN (R 4.3.1)
-#> xfun 0.39 2023-04-20 [2] CRAN (R 4.3.1)
-#> xml2 1.3.5 2023-07-06 [2] CRAN (R 4.3.1)
-#> yaml 2.3.7 2023-01-23 [2] CRAN (R 4.3.1)
+#> backports 1.4.1 2021-12-13 [1] CRAN (R 4.4.0)
+#> bibtex 0.5.1 2023-01-26 [1] CRAN (R 4.4.0)
+#> BiocManager 1.30.22 2023-08-08 [2] CRAN (R 4.4.0)
+#> BiocStyle * 2.31.0 2023-10-24 [1] Bioconductor
+#> bookdown 0.37 2023-12-01 [1] CRAN (R 4.4.0)
+#> bslib 0.6.1 2023-11-28 [2] CRAN (R 4.4.0)
+#> cachem 1.0.8 2023-05-01 [2] CRAN (R 4.4.0)
+#> cli 3.6.2 2023-12-11 [2] CRAN (R 4.4.0)
+#> desc 1.4.3 2023-12-10 [2] CRAN (R 4.4.0)
+#> digest 0.6.34 2024-01-11 [2] CRAN (R 4.4.0)
+#> evaluate 0.23 2023-11-01 [2] CRAN (R 4.4.0)
+#> fastmap 1.1.1 2023-02-24 [2] CRAN (R 4.4.0)
+#> fontawesome 0.5.2 2023-08-19 [2] CRAN (R 4.4.0)
+#> fs 1.6.3 2023-07-20 [2] CRAN (R 4.4.0)
+#> generics 0.1.3 2022-07-05 [1] CRAN (R 4.4.0)
+#> glue 1.7.0 2024-01-09 [2] CRAN (R 4.4.0)
+#> htmltools 0.5.7 2023-11-03 [2] CRAN (R 4.4.0)
+#> httr 1.4.7 2023-08-15 [2] CRAN (R 4.4.0)
+#> jquerylib 0.1.4 2021-04-26 [2] CRAN (R 4.4.0)
+#> jsonlite 1.8.8 2023-12-04 [2] CRAN (R 4.4.0)
+#> knitr 1.45 2023-10-30 [2] CRAN (R 4.4.0)
+#> lifecycle 1.0.4 2023-11-07 [2] CRAN (R 4.4.0)
+#> lubridate 1.9.3 2023-09-27 [1] CRAN (R 4.4.0)
+#> magrittr 2.0.3 2022-03-30 [2] CRAN (R 4.4.0)
+#> memoise 2.0.1 2021-11-26 [2] CRAN (R 4.4.0)
+#> pkgdown 2.0.7 2022-12-14 [2] CRAN (R 4.4.0)
+#> plyr 1.8.9 2023-10-02 [1] CRAN (R 4.4.0)
+#> purrr 1.0.2 2023-08-10 [2] CRAN (R 4.4.0)
+#> R6 2.5.1 2021-08-19 [2] CRAN (R 4.4.0)
+#> ragg 1.2.7 2023-12-11 [2] CRAN (R 4.4.0)
+#> Rcpp 1.0.12 2024-01-09 [2] CRAN (R 4.4.0)
+#> RefManageR * 1.4.0 2022-09-30 [1] CRAN (R 4.4.0)
+#> rlang 1.1.3 2024-01-10 [2] CRAN (R 4.4.0)
+#> rmarkdown 2.25 2023-09-18 [2] CRAN (R 4.4.0)
+#> sass 0.4.8 2023-12-06 [2] CRAN (R 4.4.0)
+#> sessioninfo * 1.2.2 2021-12-06 [2] CRAN (R 4.4.0)
+#> stringi 1.8.3 2023-12-11 [2] CRAN (R 4.4.0)
+#> stringr 1.5.1 2023-11-14 [2] CRAN (R 4.4.0)
+#> systemfonts 1.0.5 2023-10-09 [2] CRAN (R 4.4.0)
+#> textshaping 0.3.7 2023-10-09 [2] CRAN (R 4.4.0)
+#> timechange 0.3.0 2024-01-18 [1] CRAN (R 4.4.0)
+#> vctrs 0.6.5 2023-12-01 [2] CRAN (R 4.4.0)
+#> xfun 0.42 2024-02-08 [2] CRAN (R 4.4.0)
+#> xml2 1.3.6 2023-12-04 [2] CRAN (R 4.4.0)
+#> yaml 2.3.8 2023-12-11 [2] CRAN (R 4.4.0)
#>
#> [1] /__w/_temp/Library
#> [2] /usr/local/lib/R/site-library
@@ -376,7 +375,7 @@ Reproducibility
Bibliography
-This vignette was generated using BiocStyle
+
This vignette was generated using BiocStyle
(Oleś, 2023) with knitr (Xie,
2023) and rmarkdown
(Allaire, Xie, Dervieux et al., 2023) running behind the scenes.
@@ -385,7 +384,7 @@ Bibliography[1]
J. Allaire, Y. Xie, C. Dervieux, et al. rmarkdown: Dynamic Documents
-for R. R package version 2.23. 2023. URL:
+for R. R package version 2.25. 2023. URL:
https://github.com/rstudio/rmarkdown.
@@ -398,23 +397,23 @@
Bibliography[3]
A. Oleś. BiocStyle: Standard styles for vignettes and other
-Bioconductor documents. R package version 2.28.0. 2023. DOI:
+Bioconductor documents. R package version 2.31.0. 2023. DOI:
10.18129/B9.bioc.BiocStyle.
URL:
https://bioconductor.org/packages/BiocStyle.
-[4]
+[4]
R Core Team. R: A Language and Environment for Statistical
Computing. R Foundation for Statistical Computing. Vienna, Austria,
-2023. URL:
+2024. URL:
https://www.R-project.org/.
-[5]
-K. Rue-Albrecht. iSEEindex: iSEE extension for a landing page to a
-custom collection of data sets. R package version 0.99.13. 2022.
-URL:
+[5]
+K. Rue-Albrecht and F. Marini. iSEEindex: iSEE extension for a
+landing page to a custom collection of data sets. R package version
+1.1.1. 2024. URL:
https://github.com/iSEE/iSEEindex.
@@ -432,7 +431,7 @@
Bibliography[8]
Y. Xie. knitr: A General-Purpose Package for Dynamic Report
-Generation in R. R package version 1.43. 2023. URL:
+Generation in R. R package version 1.45. 2023. URL:
https://yihui.org/knitr/.
@@ -451,7 +450,7 @@ Bibliography
-Developed by Kevin Rue-Albrecht, Denali Therapeutics.
+Developed by Kevin Rue-Albrecht, Federico Marini, Denali Therapeutics.
diff --git a/authors.html b/authors.html
index 4f2d462..3d48737 100644
--- a/authors.html
+++ b/authors.html
@@ -17,7 +17,7 @@
@@ -72,6 +72,10 @@
Authors
+
+
+
Denali Therapeutics. Funder.
@@ -85,15 +89,15 @@ Citation
- Rue-Albrecht K (2023).
+
Rue-Albrecht K, Marini F (2024).
iSEEindex: iSEE extension for a landing page to a custom collection of data sets.
-R package version 0.99.13, https://github.com/iSEE/iSEEindex.
+R package version 1.1.1, https://github.com/iSEE/iSEEindex.
@Manual{,
title = {iSEEindex: iSEE extension for a landing page to a custom collection of data sets},
- author = {Kevin Rue-Albrecht},
- year = {2023},
- note = {R package version 0.99.13},
+ author = {Kevin Rue-Albrecht and Federico Marini},
+ year = {2024},
+ note = {R package version 1.1.1},
url = {https://github.com/iSEE/iSEEindex},
}
@@ -104,7 +108,7 @@ Citation
- Developed by Kevin Rue-Albrecht, Denali Therapeutics.
+ Developed by Kevin Rue-Albrecht, Federico Marini, Denali Therapeutics.
diff --git a/index.html b/index.html
index 1b9c996..d8243ac 100644
--- a/index.html
+++ b/index.html
@@ -38,7 +38,7 @@
@@ -235,6 +235,7 @@
Citation
Developers
- Kevin Rue-Albrecht
Author, maintainer
+- Federico Marini
Author
- Denali Therapeutics
Funder
- More about authors...
@@ -257,7 +258,7 @@ Dev status
-Developed by Kevin Rue-Albrecht, Denali Therapeutics.
+Developed by Kevin Rue-Albrecht, Federico Marini, Denali Therapeutics.
diff --git a/news/index.html b/news/index.html
index f23848b..7c282a5 100644
--- a/news/index.html
+++ b/news/index.html
@@ -17,7 +17,7 @@
@@ -63,6 +63,10 @@
Changelog
Source: NEWS.md
+
iSEEindex 0.99.13
- Added possibility to inject custom header and footer in landing page.
@@ -130,7 +134,7 @@ iSEEindex 0.9
- Developed by Kevin Rue-Albrecht, Denali Therapeutics.
+ Developed by Kevin Rue-Albrecht, Federico Marini, Denali Therapeutics.
diff --git a/pkgdown.yml b/pkgdown.yml
index 7b8d526..798a584 100644
--- a/pkgdown.yml
+++ b/pkgdown.yml
@@ -5,5 +5,5 @@ articles:
header: header.html
iSEEindex: iSEEindex.html
resources: resources.html
-last_built: 2023-07-06T20:01Z
+last_built: 2024-02-22T12:56Z
diff --git a/reference/iSEEindex-pkg.html b/reference/iSEEindex-pkg.html
index 13d458a..88f3b76 100644
--- a/reference/iSEEindex-pkg.html
+++ b/reference/iSEEindex-pkg.html
@@ -21,7 +21,7 @@
@@ -92,7 +92,7 @@
See also
- Developed by Kevin Rue-Albrecht, Denali Therapeutics.
+ Developed by Kevin Rue-Albrecht, Federico Marini, Denali Therapeutics.
diff --git a/reference/iSEEindex.html b/reference/iSEEindex.html
index 842c37f..4bc2108 100644
--- a/reference/iSEEindex.html
+++ b/reference/iSEEindex.html
@@ -19,7 +19,7 @@
@@ -249,7 +249,7 @@
Examples
- Developed by Kevin Rue-Albrecht, Denali Therapeutics.
+ Developed by Kevin Rue-Albrecht, Federico Marini, Denali Therapeutics.
diff --git a/reference/iSEEindexHttpsResource-class.html b/reference/iSEEindexHttpsResource-class.html
index 5284f53..93159b7 100644
--- a/reference/iSEEindexHttpsResource-class.html
+++ b/reference/iSEEindexHttpsResource-class.html
@@ -19,7 +19,7 @@
@@ -130,7 +130,7 @@
Examples
- Developed by Kevin Rue-Albrecht, Denali Therapeutics.
+ Developed by Kevin Rue-Albrecht, Federico Marini, Denali Therapeutics.
diff --git a/reference/iSEEindexLocalhostResource-class.html b/reference/iSEEindexLocalhostResource-class.html
index 3369dc7..a8c5774 100644
--- a/reference/iSEEindexLocalhostResource-class.html
+++ b/reference/iSEEindexLocalhostResource-class.html
@@ -19,7 +19,7 @@
@@ -146,7 +146,7 @@
Examples
- Developed by Kevin Rue-Albrecht, Denali Therapeutics.
+ Developed by Kevin Rue-Albrecht, Federico Marini, Denali Therapeutics.
diff --git a/reference/iSEEindexRcallResource-class.html b/reference/iSEEindexRcallResource-class.html
index 486bbcd..9cb6ea3 100644
--- a/reference/iSEEindexRcallResource-class.html
+++ b/reference/iSEEindexRcallResource-class.html
@@ -19,7 +19,7 @@
@@ -144,7 +144,7 @@
Examples
- Developed by Kevin Rue-Albrecht, Denali Therapeutics.
+ Developed by Kevin Rue-Albrecht, Federico Marini, Denali Therapeutics.
diff --git a/reference/iSEEindexResource-class.html b/reference/iSEEindexResource-class.html
index 347ed74..a38ead9 100644
--- a/reference/iSEEindexResource-class.html
+++ b/reference/iSEEindexResource-class.html
@@ -17,7 +17,7 @@
@@ -148,7 +148,7 @@
Examples
- Developed by Kevin Rue-Albrecht, Denali Therapeutics.
+ Developed by Kevin Rue-Albrecht, Federico Marini, Denali Therapeutics.
diff --git a/reference/iSEEindexResource-generics.html b/reference/iSEEindexResource-generics.html
index 534865d..4862ba4 100644
--- a/reference/iSEEindexResource-generics.html
+++ b/reference/iSEEindexResource-generics.html
@@ -17,7 +17,7 @@
@@ -116,8 +116,8 @@
Examples
uri = "rcall://system.file(package='iSEEindex','ReprocessedAllenData_config_01.R')"
))
precache(x, bfc, "ID0")
-#> BFC1
-#> "/tmp/Rtmp0z7NiQ/c2626c09d44_ReprocessedAllenData_config_01.R"
+#> BFC1
+#> "/tmp/RtmptNSUps/18814398f88d_ReprocessedAllenData_config_01.R"
@@ -128,7 +128,7 @@ Examples
- Developed by Kevin Rue-Albrecht, Denali Therapeutics.
+ Developed by Kevin Rue-Albrecht, Federico Marini, Denali Therapeutics.
diff --git a/reference/iSEEindexS3Resource-class.html b/reference/iSEEindexS3Resource-class.html
index 1d9d506..485abee 100644
--- a/reference/iSEEindexS3Resource-class.html
+++ b/reference/iSEEindexS3Resource-class.html
@@ -21,7 +21,7 @@
@@ -204,7 +204,7 @@
Examples
- Developed by Kevin Rue-Albrecht, Denali Therapeutics.
+ Developed by Kevin Rue-Albrecht, Federico Marini, Denali Therapeutics.
diff --git a/reference/index.html b/reference/index.html
index 1873680..8f4573e 100644
--- a/reference/index.html
+++ b/reference/index.html
@@ -17,7 +17,7 @@
@@ -103,7 +103,7 @@
All functions
- Developed by Kevin Rue-Albrecht, Denali Therapeutics.
+ Developed by Kevin Rue-Albrecht, Federico Marini, Denali Therapeutics.