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config.log
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This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.
It was created by apigenome configure 0.2.0, which was
generated by GNU Autoconf 2.69. Invocation command line was
$ ./configure --prefix=/net/fantasia/home/hmkang/tools/apigenome.master/ --no-create --no-recursion
## --------- ##
## Platform. ##
## --------- ##
hostname = fantasia
uname -m = x86_64
uname -r = 4.15.0-107-generic
uname -s = Linux
uname -v = #108~16.04.1-Ubuntu SMP Fri Jun 12 02:57:13 UTC 2020
/usr/bin/uname -p = unknown
/bin/uname -X = unknown
/bin/arch = unknown
/usr/bin/arch -k = unknown
/usr/convex/getsysinfo = unknown
/usr/bin/hostinfo = unknown
/bin/machine = unknown
/usr/bin/oslevel = unknown
/bin/universe = unknown
PATH: /usr/cluster/software/bionic/perl/5.18.2/bin
PATH: /home/hmkang/bin
PATH: /usr/local/sbin
PATH: /usr/local/bin
PATH: /usr/sbin
PATH: /usr/bin
PATH: /sbin
PATH: /bin
PATH: /usr/games
PATH: /usr/local/games
PATH: /usr/cluster/bin
PATH: /opt/puppetlabs/bin
PATH: /net/fantasia/home/hmkang/bin
PATH: /net/fantasia/home/hmkang/.local/bin
PATH: /usr/cluster/bin
PATH: /net/fantasia/home/hmkang/tools/scala/bin
PATH: /home/hmkang/.local/bin
## ----------- ##
## Core tests. ##
## ----------- ##
configure:1787: checking for a BSD-compatible install
configure:1855: result: /usr/bin/install -c
configure:1866: checking whether build environment is sane
configure:1921: result: yes
configure:2072: checking for a thread-safe mkdir -p
configure:2111: result: /bin/mkdir -p
configure:2118: checking for gawk
configure:2134: found /usr/bin/gawk
configure:2145: result: gawk
configure:2156: checking whether make sets $(MAKE)
configure:2178: result: yes
configure:2207: checking whether make supports nested variables
configure:2224: result: yes
configure:2354: checking for perl
configure:2370: found /usr/bin/perl
configure:2381: result: yes
configure:2396: checking for gs
configure:2412: found /usr/bin/gs
configure:2423: result: yes
configure:2438: checking for Rscript
configure:2454: found /usr/bin/Rscript
configure:2465: result: yes
configure:2480: checking for R
configure:2496: found /usr/bin/R
configure:2507: result: yes
configure:2522: checking for grep
configure:2538: found /bin/grep
configure:2549: result: yes
configure:2564: checking for mv
configure:2580: found /bin/mv
configure:2591: result: yes
configure:2606: checking for rm
configure:2622: found /bin/rm
configure:2633: result: yes
configure:2648: checking for make
configure:2664: found /usr/bin/make
configure:2675: result: yes
configure:2690: checking for cat
configure:2706: found /bin/cat
configure:2717: result: yes
configure:2732: checking for cut
configure:2748: found /usr/bin/cut
configure:2759: result: yes
configure:2774: checking for dirname
configure:2790: found /usr/bin/dirname
configure:2801: result: yes
configure:2816: checking for head
configure:2832: found /usr/bin/head
configure:2843: result: yes
configure:2858: checking for mkdir
configure:2874: found /bin/mkdir
configure:2885: result: yes
configure:2900: checking for sort
configure:2916: found /usr/bin/sort
configure:2927: result: yes
configure:2942: checking for zcat
configure:2958: found /bin/zcat
configure:2969: result: yes
configure:2984: checking for groff
configure:3000: found /home/hmkang/bin/groff
configure:3011: result: yes
configure:3026: checking for pfbtops
configure:3042: found /home/hmkang/bin/pfbtops
configure:3053: result: yes
configure:3068: checking for gnuplot
configure:3084: found /home/hmkang/bin/gnuplot
configure:3095: result: yes
configure:3218: checking that generated files are newer than configure
configure:3224: result: done
configure:3232: creating ./config.status
## ---------------- ##
## Cache variables. ##
## ---------------- ##
ac_cv_env_build_alias_set=
ac_cv_env_build_alias_value=
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_path_install='/usr/bin/install -c'
ac_cv_path_mkdir=/bin/mkdir
ac_cv_prog_AWK=gawk
ac_cv_prog_CAT_CHECK=yes
ac_cv_prog_CUT_CHECK=yes
ac_cv_prog_DIRNAME_CHECK=yes
ac_cv_prog_GNUPLOT_CHECK=yes
ac_cv_prog_GREP_CHECK=yes
ac_cv_prog_GROFF_CHECK=yes
ac_cv_prog_GS_CHECK=yes
ac_cv_prog_HEAD_CHECK=yes
ac_cv_prog_MAKE_CHECK=yes
ac_cv_prog_MKDIR_CHECK=yes
ac_cv_prog_MV_CHECK=yes
ac_cv_prog_PERL_CHECK=yes
ac_cv_prog_PFBTOPS_CHECK=yes
ac_cv_prog_RM_CHECK=yes
ac_cv_prog_RSCRIPT_CHECK=yes
ac_cv_prog_R_CHECK=yes
ac_cv_prog_SORT_CHECK=yes
ac_cv_prog_ZCAT_CHECK=yes
ac_cv_prog_make_make_set=yes
am_cv_make_support_nested_variables=yes
## ----------------- ##
## Output variables. ##
## ----------------- ##
ACLOCAL='${SHELL} /home/hmkang/code/working/apigenome.master/missing aclocal-1.15'
AMTAR='$${TAR-tar}'
AM_BACKSLASH='\'
AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)'
AM_DEFAULT_VERBOSITY='1'
AM_V='$(V)'
AUTOCONF='${SHELL} /home/hmkang/code/working/apigenome.master/missing autoconf'
AUTOHEADER='${SHELL} /home/hmkang/code/working/apigenome.master/missing autoheader'
AUTOMAKE='${SHELL} /home/hmkang/code/working/apigenome.master/missing automake-1.15'
AWK='gawk'
CAT_CHECK='yes'
CUT_CHECK='yes'
CYGPATH_W='echo'
DEFS='-DHAVE_CONFIG_H'
DIRNAME_CHECK='yes'
ECHO_C=''
ECHO_N='-n'
ECHO_T=''
GNUPLOT_CHECK='yes'
GREP_CHECK='yes'
GROFF_CHECK='yes'
GS_CHECK='yes'
HEAD_CHECK='yes'
INSTALL_DATA='${INSTALL} -m 644'
INSTALL_PROGRAM='${INSTALL}'
INSTALL_SCRIPT='${INSTALL}'
INSTALL_STRIP_PROGRAM='$(install_sh) -c -s'
LIBOBJS=''
LIBS=''
LTLIBOBJS=''
MAKEINFO='${SHELL} /home/hmkang/code/working/apigenome.master/missing makeinfo'
MAKE_CHECK='yes'
MKDIR_CHECK='yes'
MKDIR_P='/bin/mkdir -p'
MV_CHECK='yes'
PACKAGE='apigenome'
PACKAGE_BUGREPORT='[email protected]'
PACKAGE_NAME='apigenome'
PACKAGE_STRING='apigenome 0.2.0'
PACKAGE_TARNAME='apigenome'
PACKAGE_URL=''
PACKAGE_VERSION='0.2.0'
PATH_SEPARATOR=':'
PERL_CHECK='yes'
PFBTOPS_CHECK='yes'
RM_CHECK='yes'
RSCRIPT_CHECK='yes'
R_CHECK='yes'
SET_MAKE=''
SHELL='/bin/sh'
SORT_CHECK='yes'
STRIP=''
VERSION='0.2.0'
ZCAT_CHECK='yes'
am__isrc=''
am__leading_dot='.'
am__tar='$${TAR-tar} chof - "$$tardir"'
am__untar='$${TAR-tar} xf -'
bindir='${exec_prefix}/bin'
build_alias=''
datadir='${datarootdir}'
datarootdir='${prefix}/share'
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
dvidir='${docdir}'
exec_prefix='${prefix}'
host_alias=''
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='${datarootdir}/info'
install_sh='${SHELL} /home/hmkang/code/working/apigenome.master/install-sh'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
localedir='${datarootdir}/locale'
localstatedir='${prefix}/var'
mandir='${datarootdir}/man'
mkdir_p='$(MKDIR_P)'
oldincludedir='/usr/include'
pdfdir='${docdir}'
prefix='/net/fantasia/home/hmkang/tools/apigenome.master'
program_transform_name='s,x,x,'
psdir='${docdir}'
runstatedir='${localstatedir}/run'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
sysconfdir='${prefix}/etc'
target_alias=''
## ----------- ##
## confdefs.h. ##
## ----------- ##
/* confdefs.h */
#define PACKAGE_NAME "apigenome"
#define PACKAGE_TARNAME "apigenome"
#define PACKAGE_VERSION "0.2.0"
#define PACKAGE_STRING "apigenome 0.2.0"
#define PACKAGE_BUGREPORT "[email protected]"
#define PACKAGE_URL ""
#define PACKAGE "apigenome"
#define VERSION "0.2.0"
configure: exit 0
## ---------------------- ##
## Running config.status. ##
## ---------------------- ##
This file was extended by apigenome config.status 0.2.0, which was
generated by GNU Autoconf 2.69. Invocation command line was
CONFIG_FILES =
CONFIG_HEADERS =
CONFIG_LINKS =
CONFIG_COMMANDS =
$ ./config.status
on fantasia
config.status:830: creating Makefile
config.status:830: creating scripts/Makefile
config.status:830: creating data/Makefile
config.status:830: creating config.h
config.status:1011: config.h is unchanged
## ---------------------- ##
## Running config.status. ##
## ---------------------- ##
This file was extended by apigenome config.status 0.2.0, which was
generated by GNU Autoconf 2.69. Invocation command line was
CONFIG_FILES =
CONFIG_HEADERS =
CONFIG_LINKS =
CONFIG_COMMANDS =
$ ./config.status scripts/Makefile
on fantasia
config.status:830: creating scripts/Makefile
## ---------------------- ##
## Running config.status. ##
## ---------------------- ##
This file was extended by apigenome config.status 0.2.0, which was
generated by GNU Autoconf 2.69. Invocation command line was
CONFIG_FILES =
CONFIG_HEADERS =
CONFIG_LINKS =
CONFIG_COMMANDS =
$ ./config.status config.h
on fantasia
config.status:830: creating config.h
config.status:1011: config.h is unchanged