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Integrate scRNASEQ 10X Visualization into Vitessce #212

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ilan-gold opened this issue May 1, 2020 · 4 comments
Closed

Integrate scRNASEQ 10X Visualization into Vitessce #212

ilan-gold opened this issue May 1, 2020 · 4 comments
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enhancement New feature or request

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@ilan-gold
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There should be a json behind the entities-api that we can query for and display as a scatterplot in Vitessce for these scRNASEQ datasets.

@ilan-gold ilan-gold added enhancement New feature or request UI labels May 1, 2020
@ilan-gold ilan-gold self-assigned this May 1, 2020
@ngehlenborg
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Has this been taken care of?

@ilan-gold
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I think so. There's still these other visualizations that we could do that I learned about from Matt after opening this issue: hubmapconsortium/portal-containers#30. Aside from that, there is just the color palette in Vitessce, really. I'll raise an issue there.

@ilan-gold
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Added an issue in Vitessce: vitessce/vitessce#567

@keller-mark
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Going to close this, the portal-containers issue hubmapconsortium/portal-containers#30 should take care of the rest of the data processing steps

@shirey shirey added this to Pitt HIVE Jun 7, 2024
@shirey shirey moved this to Done in Pitt HIVE Jun 7, 2024
@shirey shirey removed this from Pitt HIVE Sep 11, 2024
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