publication-v0.0.yaml

files:
  -
    example: 'data/file1.ext'
    pattern: '(data)/.+'
    description: 'Supplementary data files for the publication. All files referenced by the Vitessce visualization configurations in the vignettes must be included in this directory.'
    required: True
  -
    pattern: '(vignettes)/.+'
    description: 'Subdirectory containing Vitessce visualization files and a description of those files.'
    required: True
  -
    example: 'vignettes/vignette_01/file1.json'
    pattern: '(vignettes)/(vignette)_\d+/[^/]+\.json'
    description: 'Vitessce visualization configuration files. One or more visualization configurations can be provided per vignette.'
    required: False
  -
    example: 'vignettes/vignette_02/description.md'
    pattern: '(vignettes)/(vignette)_\d+/(description)\.md'
    description: 'Description of the vignette and titles for the visualization configuration files.'
    required: False
  -
    pattern: extras\/.*
    required: False
    description: Folder for general lab-specific files related to the dataset. [Exists in all assays]