ims-v0.0.yaml

files:
  -
    pattern: 'csv/[^/]+\.csv'
    description: 'Intensities M/Z values with Pixel location'
    required: False
  -
    pattern: 'imzML/[^/]+\.ibd'
    description: 'Mass spec data saved in a binary format.'
    required: True
  -
    pattern: 'imzML/[^/]+\.imzML'
    description: 'Mass spec metadata saved in XML format. Index to .ibd file.'
    required: True
  -
    pattern: 'metadata/[^/]+_LipidAssignments\.xlsx'
    description: 'Microsoft Excel file containing the m/z, assignment, lipid class, etc.'
    required: False
  - 
    pattern: 'metadata/[^/]+_meta\.json'
    description: 'JSON file containing the machine parameters/settings'
    required: False
  -
    pattern: 'metadata/[^/]+_microscopy\.txt'
    description: 'Transformations/map back to autofluorescence microscopy (related) data'
    required: False
  -
    pattern: 'ometiffs/[^/]+_multilayer\.ome\.tiff'
    description: 'Aligned multilayer OME TIFF file of the IMS data'
    required: True
  -
    pattern: 'ometiffs/separate/[^/]+_mz[^/]+\.ome\.tiff'
    description: 'Each file is a different M/Z value.'
    required: False
  -
    pattern: extras\/.*
    required: False
    description: Folder for general lab-specific files related to the dataset. [Exists in all assays]