celldive-v0.0.yaml

#  GE CellDIVE Directory Schema
files:
  -
    pattern: 'channel_list\.txt'
    description: 'Information about the capture channels and tags (comma separated)'
    required: True
  -
    pattern: 'slide_list\.txt'
    description: 'Information about the slides used by the experiment- each line corresponds to a slide name (begins with S - e.g. S20030077) - used in filenames'
    required: True
  -
    example: 'HuBMAP_OME/region_011/S20030092_region_011.ome.tif'
    pattern: 'HuBMAP_OME/region_\d+/S\d+_region_\d+\.ome\.tif'
    description: 'OME TIFF Files for the corresponding region (e.g. region_001) by slide (e.g S20030077)'
    required: True
  -
    example: 'HuBMAP_rounds/round_info_002.dat'
    pattern: 'HuBMAP_rounds/round_info_\d+\.dat'
    description: 'Metadata file for the capture item-value tab separated format'
    required: True
  -
    pattern: extras\/.*
    required: False
    description: Folder for general lab-specific files related to the dataset. [Exists in all assays]