From 65f30fa21a575e914a5cdeee5cd9d0aa5b714a5a Mon Sep 17 00:00:00 2001
From: mccalluc <mccalluc@users.noreply.github.com>
Date: Wed, 11 Dec 2019 15:24:50 -0500
Subject: [PATCH 1/4] Workflow which runs ls

---
 workflows/cwl/simple-cli-example/test-input/a.txt |  0
 workflows/cwl/simple-cli-example/test-input/z.txt |  0
 workflows/cwl/simple-cli-example/test-job.yml     |  3 +++
 workflows/cwl/simple-cli-example/workflow.cwl     | 15 +++++++++++++++
 4 files changed, 18 insertions(+)
 create mode 100644 workflows/cwl/simple-cli-example/test-input/a.txt
 create mode 100644 workflows/cwl/simple-cli-example/test-input/z.txt
 create mode 100644 workflows/cwl/simple-cli-example/test-job.yml
 create mode 100755 workflows/cwl/simple-cli-example/workflow.cwl

diff --git a/workflows/cwl/simple-cli-example/test-input/a.txt b/workflows/cwl/simple-cli-example/test-input/a.txt
new file mode 100644
index 0000000..e69de29
diff --git a/workflows/cwl/simple-cli-example/test-input/z.txt b/workflows/cwl/simple-cli-example/test-input/z.txt
new file mode 100644
index 0000000..e69de29
diff --git a/workflows/cwl/simple-cli-example/test-job.yml b/workflows/cwl/simple-cli-example/test-job.yml
new file mode 100644
index 0000000..94e81e6
--- /dev/null
+++ b/workflows/cwl/simple-cli-example/test-job.yml
@@ -0,0 +1,3 @@
+input_directory:
+  class: Directory
+  path: test-input
diff --git a/workflows/cwl/simple-cli-example/workflow.cwl b/workflows/cwl/simple-cli-example/workflow.cwl
new file mode 100755
index 0000000..44db9b0
--- /dev/null
+++ b/workflows/cwl/simple-cli-example/workflow.cwl
@@ -0,0 +1,15 @@
+#!/usr/bin/env cwl-runner
+
+cwlVersion: v1.0
+class: CommandLineTool
+baseCommand: ls
+inputs:
+  input_directory:
+    type: Directory
+    inputBinding:
+        position: 1
+stdout:
+  ls.txt
+outputs:
+  output_file:
+    type: stdout

From 964dc812f499515f6493e3969fcd567d2d2a83a4 Mon Sep 17 00:00:00 2001
From: mccalluc <mccalluc@users.noreply.github.com>
Date: Wed, 11 Dec 2019 15:43:59 -0500
Subject: [PATCH 2/4] Add test

---
 .gitignore                                    |  1 +
 test.sh                                       | 20 +++++++++++++++++++
 .../test-output-expected/ls.txt               |  2 ++
 3 files changed, 23 insertions(+)
 create mode 100755 test.sh
 create mode 100644 workflows/cwl/simple-cli-example/test-output-expected/ls.txt

diff --git a/.gitignore b/.gitignore
index ddeaaf8..edcbe0f 100644
--- a/.gitignore
+++ b/.gitignore
@@ -1,4 +1,5 @@
 airflow.cfg
+**/test-output-actual
 
 # Byte-compiled / optimized / DLL files
 __pycache__/
diff --git a/test.sh b/test.sh
new file mode 100755
index 0000000..fae69c4
--- /dev/null
+++ b/test.sh
@@ -0,0 +1,20 @@
+#!/usr/bin/env bash
+set -o errexit
+
+start() { echo travis_fold':'start:$1; echo $1; }
+end() { echo travis_fold':'end:$1; }
+die() { set +v; echo "$*" 1>&2 ; sleep 1; exit 1; }
+
+CWL_NAME=workflow.cwl
+OUTPUT_NAME=test-output-actual
+for CWL_PATH in workflows/cwl/*/workflow.cwl; do
+  cd `dirname $CWL_PATH`
+  LABEL=`basename $PWD`
+  start $LABEL
+  mkdir $OUTPUT_NAME || echo 'Output directory already exists...'
+  cd $OUTPUT_NAME
+  ../$CWL_NAME ../test-job.yml
+  cd ..
+  diff -w -r test-output-expected $OUTPUT_NAME -x .DS_Store | head -n100 | cut -c 1-100
+  end $LABEL
+done
diff --git a/workflows/cwl/simple-cli-example/test-output-expected/ls.txt b/workflows/cwl/simple-cli-example/test-output-expected/ls.txt
new file mode 100644
index 0000000..f6cf350
--- /dev/null
+++ b/workflows/cwl/simple-cli-example/test-output-expected/ls.txt
@@ -0,0 +1,2 @@
+b.txt
+y.txt

From a21a8acf13ec4ccd7933e747dd3276fbb308f025 Mon Sep 17 00:00:00 2001
From: mccalluc <mccalluc@users.noreply.github.com>
Date: Wed, 11 Dec 2019 15:46:46 -0500
Subject: [PATCH 3/4] Fix test fixture

---
 workflows/cwl/simple-cli-example/test-output-expected/ls.txt | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/workflows/cwl/simple-cli-example/test-output-expected/ls.txt b/workflows/cwl/simple-cli-example/test-output-expected/ls.txt
index f6cf350..8933cae 100644
--- a/workflows/cwl/simple-cli-example/test-output-expected/ls.txt
+++ b/workflows/cwl/simple-cli-example/test-output-expected/ls.txt
@@ -1,2 +1,2 @@
-b.txt
-y.txt
+a.txt
+z.txt

From 2f0c500b829b5357eb01f0a9171f00b95fe08b07 Mon Sep 17 00:00:00 2001
From: mccalluc <mccalluc@users.noreply.github.com>
Date: Wed, 11 Dec 2019 16:00:52 -0500
Subject: [PATCH 4/4] Travis and requirements.txt

---
 .travis.yml      | 6 ++++++
 requirements.txt | 2 ++
 2 files changed, 8 insertions(+)
 create mode 100644 .travis.yml
 create mode 100644 requirements.txt

diff --git a/.travis.yml b/.travis.yml
new file mode 100644
index 0000000..7acae01
--- /dev/null
+++ b/.travis.yml
@@ -0,0 +1,6 @@
+language: python
+python:
+  - '3.7'
+cache: pip
+script:
+  - ./test.sh
diff --git a/requirements.txt b/requirements.txt
new file mode 100644
index 0000000..dee47cd
--- /dev/null
+++ b/requirements.txt
@@ -0,0 +1,2 @@
+cwlref-runner==1.0
+cwltool==1.0.20191206125148