printFluxVector.m

function printFluxVector(model,fluxData,nonZeroFlag,excFlag,sortCol,fileName,headerRow,formulaFlag)
%printFluxVector Print a flux vector with reaction labels
%
% printFluxVector(model,fluxData,nonZeroFlag,excFlag,sortCol,fileName,headerRow,formulaFlag)
%
%INPUTS
% model         COBRA model structure
% fluxData      Data matrix/vector (for example, solution.x)
%
%OPTIONAL INPUTS
% nonZeroFlag   Only print nonzero rows (Default = false)
% excFlag       Only print exchange fluxes (Default = false)
% sortCol       Column used for sorting (-1, none; 0, labels; >0, data
%               columns;) (Default = -1)
% fileName      Name of output file (Default = [])
% headerRow     Header (Default = [])
% formulaFlag   Print reaction formulas (Default = false)
%
% Markus Herrgard 6/9/06 

if (nargin < 3)
    nonZeroFlag = false;
end
if (nargin < 4)
    excFlag = false;
end
if (nargin < 5)
    sortCol = -1;
end
if (nargin < 6)
    fileName = [];
end
if (nargin < 7)
    headerRow = [];
end
if (nargin < 8)
    formulaFlag = false;
end

if (excFlag)
    selExchange = findExcRxns(model,true,false);
    labels = model.rxns(selExchange);
    fluxData = fluxData(selExchange,:);
else
    labels = model.rxns;
end

% Add reaction formulas
if (formulaFlag)
   rxnNames = labels;
   formulas = printRxnFormula(model,labels,false,false); 
   for i = 1:length(rxnNames)
       labels{i,2} = formulas{i};
   end
end

printLabeledData(labels,fluxData,nonZeroFlag,sortCol,fileName,headerRow)