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mutation_comparison.py
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mutation_comparison = {
# "20I (Alpha, V1)\n(B.1.1.7)": {
# "nonsynonymous": [
# "S:H69-",
# "S:V70-",
# "S:Y144-",
# "S:N501Y",
# "S:A570D",
# "S:D614G",
# "S:P681H",
# "S:T716I",
# "S:S982A",
# "S:D1118H",
# ]
# },
# "20H (Beta, V2)\n(B.1.351)": {
# "nonsynonymous": [
# "S:L18F",
# "S:D80A",
# "S:D215G",
# "S:L241-",
# "S:L242-",
# "S:A243-",
# "S:K417N",
# "S:E484K",
# "S:N501Y",
# "S:D614G",
# "S:A701V",
# ]
# },
# "20J (Gamma, V3)\n(P.1)": {
# "nonsynonymous": [
# "S:L18F",
# "S:T20N",
# "S:P26S",
# "S:D138Y",
# "S:R190S",
# "S:K417T",
# "S:E484K",
# "S:N501Y",
# "S:D614G",
# "S:H655Y",
# "S:T1027I",
# "S:V1176F",
# ]
# },
# "21A (Delta)\n(B.1.617.2)": {
# "nonsynonymous": [
# "S:T19R",
# "S:G142D",
# "S:E156-",
# "S:F157-",
# "S:R158G",
# "S:L452R",
# "S:T478K",
# "S:D614G",
# "S:P681R",
# "S:D950N"
# ]
# },
# "21B (Kappa)\n(B.1.617.1)": {
# "nonsynonymous": [
# "S:E154K",
# "S:L452R",
# "S:E484Q",
# "S:D614G",
# "S:P681R",
# "S:Q1071H"
# ]
# },
"21K (Omicron)\n(BA.1)": {
"nonsynonymous": [
"S:A67V",
"S:H69-",
"S:V70-",
"S:T95I",
"S:G142-",
"S:V143-",
"S:Y144-",
"S:Y145D",
"S:N211-",
"S:L212I",
"S:G339D",
"S:S371L",
"S:S373P",
"S:S375F",
"S:K417N",
"S:N440K",
"S:G446S",
"S:S477N",
"S:T478K",
"S:E484A",
"S:Q493R",
"S:G496S",
"S:Q498R",
"S:N501Y",
"S:Y505H",
"S:T547K",
"S:D614G",
"S:H655Y",
"S:N679K",
"S:P681H",
"S:N764K",
"S:D796Y",
"S:N856K",
"S:Q954H",
"S:N969K",
"S:L981F"
]
},
"21L (Omicron)\n(BA.2)": {
"nonsynonymous": [
"S:T19I",
"S:L24-",
"S:P25-",
"S:P26-",
"S:A27S",
"S:G142D",
"S:V213G",
"S:G339D",
"S:S371F",
"S:S373P",
"S:S375F",
"S:T376A",
"S:D405N",
"S:R408S",
"S:K417N",
"S:N440K",
"S:S477N",
"S:T478K",
"S:E484A",
"S:Q493R",
"S:Q498R",
"S:N501Y",
"S:Y505H",
"S:D614G",
"S:H655Y",
"S:N679K",
"S:P681H",
"S:N764K",
"S:D796Y",
"S:Q954H",
"S:N969K"
]
},
"22A & 22B (Omicron)\n(BA.4&5)": {
"nonsynonymous": [
"S:T19I",
"S:L24-",
"S:L24-",
"S:P25-",
"S:P25-",
"S:P25-",
"S:P26-",
"S:P26-",
"S:P26-",
"S:A27S",
"S:H69-",
"S:H69-",
"S:H69-",
"S:V70-",
"S:V70-",
"S:V70-",
"S:G142D",
"S:V213G",
"S:G339D",
"S:S371F",
"S:S373P",
"S:S375F",
"S:T376A",
"S:D405N",
"S:R408S",
"S:K417N",
"S:N440K",
"S:L452R",
"S:S477N",
"S:T478K",
"S:E484A",
"S:F486V",
"S:Q498R",
"S:N501Y",
"S:Y505H",
"S:D614G",
"S:H655Y",
"S:N679K",
"S:P681H",
"S:N764K",
"S:D796Y",
"S:Q954H",
"S:N969K",
]
},
# "22C (Omicron)\n(BA.2.12.1)": {
# "nonsynonymous": [
# "S:T19I",
# "S:L24-",
# "S:L24-",
# "S:P25-",
# "S:P25-",
# "S:P25-",
# "S:P26-",
# "S:P26-",
# "S:P26-",
# "S:A27S",
# "S:G142D",
# "S:V213G",
# "S:G339D",
# "S:S371F",
# "S:S373P",
# "S:S375F",
# "S:T376A",
# "S:D405N",
# "S:R408S",
# "S:K417N",
# "S:N440K",
# "S:L452Q",
# "S:S477N",
# "S:T478K",
# "S:E484A",
# "S:Q493R",
# "S:Q498R",
# "S:N501Y",
# "S:Y505H",
# "S:D614G",
# "S:H655Y",
# "S:N679K",
# "S:P681H",
# "S:S704L",
# "S:N764K",
# "S:D796Y",
# "S:Q954H",
# "S:N969K"
# ]
# },
# "22D (Omicron)\n(BA.2.75)": {
# "nonsynonymous": [
# "S:T19I",
# "S:L24-",
# "S:P25-",
# "S:P26-",
# "S:A27S",
# "S:G142D",
# "S:K147E",
# "S:W152R",
# "S:F157L",
# "S:I210V",
# "S:V213G",
# "S:G257S",
# "S:G339H",
# "S:S371F",
# "S:S373P",
# "S:S375F",
# "S:T376A",
# "S:D405N",
# "S:R408S",
# "S:K417N",
# "S:N440K",
# "S:G446S",
# "S:N460K",
# "S:S477N",
# "S:T478K",
# "S:E484A",
# "S:R493Q",
# "S:Q498R",
# "S:N501Y",
# "S:Y505H",
# "S:D614G",
# "S:H655Y",
# "S:N679K",
# "S:P681H",
# "S:N764K",
# "S:D796Y",
# "S:Q954H",
# "S:N969K"
# ]
# },
"22E (Omicron)\n(BQ.1)": {
"nonsynonymous": [
"S:T19I",
"S:L24-",
"S:L24-",
"S:P25-",
"S:P25-",
"S:P25-",
"S:P26-",
"S:P26-",
"S:P26-",
"S:A27S",
"S:H69-",
"S:H69-",
"S:H69-",
"S:V70-",
"S:V70-",
"S:V70-",
"S:G142D",
"S:V213G",
"S:G339D",
"S:S371F",
"S:S373P",
"S:S375F",
"S:T376A",
"S:D405N",
"S:R408S",
"S:K417N",
"S:N440K",
"S:K444T",
"S:L452R",
"S:N460K",
"S:S477N",
"S:T478K",
"S:E484A",
"S:F486V",
"S:Q493Q",
"S:Q498R",
"S:N501Y",
"S:Y505H",
"S:D614G",
"S:H655Y",
"S:N679K",
"S:P681H",
"S:N764K",
"S:D796Y",
"S:Q954H",
"S:N969K",
]
},
"22F (Omicron)\n(XBB)": {
"nonsynonymous": [
"S:T19I",
"S:L24-",
"S:P25-",
"S:P26-",
"S:A27S",
"S:V83A",
"S:G142D",
"S:Y144-",
"S:H146Q",
"S:Q183E",
"S:V213E",
"S:G339H",
"S:R346T",
"S:L368I",
"S:S371F",
"S:S373P",
"S:S375F",
"S:T376A",
"S:D405N",
"S:R408S",
"S:K417N",
"S:N440K",
"S:V445P",
"S:G446S",
"S:N460K",
"S:S477N",
"S:T478K",
"S:E484A",
"S:F486S",
"S:F490S",
"S:R493Q",
"S:Q498R",
"S:N501Y",
"S:Y505H",
"S:D614G",
"S:H655Y",
"S:N679K",
"S:P681H",
"S:N764K",
"S:D796Y",
"S:Q954H",
"S:N969K",
]
},
"23A (Omicron)\n(XBB.1.5)": {
"nonsynonymous": [
"S:T19I",
"S:L24-",
"S:P25-",
"S:P26-",
"S:A27S",
"S:V83A",
"S:G142D",
"S:Y144-",
"S:H146Q",
"S:Q183E",
"S:V213E",
"S:G252V",
"S:G339H",
"S:R346T",
"S:L368I",
"S:S371F",
"S:S373P",
"S:S375F",
"S:T376A",
"S:D405N",
"S:R408S",
"S:K417N",
"S:N440K",
"S:V445P",
"S:G446S",
"S:N460K",
"S:S477N",
"S:T478K",
"S:E484A",
"S:F486P",
"S:F490S",
"S:R493Q",
"S:Q498R",
"S:N501Y",
"S:Y505H",
"S:D614G",
"S:H655Y",
"S:N679K",
"S:P681H",
"S:N764K",
"S:D796Y",
"S:Q954H",
"S:N969K",
]
},
# "23B (Omicron)\n(XBB.1.16)": {
# "nonsynonymous": [
# "S:T19I",
# "S:L24-",
# "S:L24-",
# "S:P25-",
# "S:P25-",
# "S:P25-",
# "S:P26-",
# "S:A27S",
# "S:V83A",
# "S:G142D",
# "S:Y144-",
# "S:H146Q",
# "S:E180V",
# "S:Q183E",
# "S:V213E",
# "S:G252V",
# "S:G339H",
# "S:R346T",
# "S:L368I",
# "S:S371F",
# "S:S373P",
# "S:S375F",
# "S:T376A",
# "S:D405N",
# "S:R408S",
# "S:K417N",
# "S:N440K",
# "S:V445P",
# "S:G446S",
# "S:N460K",
# "S:S477N",
# "S:T478R",
# "S:E484A",
# "S:F486P",
# "S:F490S",
# "S:R493Q",
# "S:Q498R",
# "S:N501Y",
# "S:Y505H",
# "S:D614G",
# "S:H655Y",
# "S:N679K",
# "S:P681H",
# "S:N764K",
# "S:D796Y",
# "S:Q954H",
# "S:N969K",
# ]
# },
"23C (Omicron)\n(CH.1.1)": {
"nonsynonymous": [
"S:T19I",
"S:L24-",
"S:P25-",
"S:P26-",
"S:A27S",
"S:G142D",
"S:K147E",
"S:W152R",
"S:F157L",
"S:I210V",
"S:V213G",
"S:G257S",
"S:G339H",
"S:R346T",
"S:S371F",
"S:S373P",
"S:S375F",
"S:T376A",
"S:D405N",
"S:R408S",
"S:K417N",
"S:N440K",
"S:K444T",
"S:G446S",
"S:L452R",
"S:N460K",
"S:S477N",
"S:T478K",
"S:E484A",
"S:R493Q",
"S:F486S",
"S:Q498R",
"S:N501Y",
"S:Y505H",
"S:D614G",
"S:H655Y",
"S:N679K",
"S:P681H",
"S:N764K",
"S:D796Y",
"S:Q954H",
"S:N969K",
]
},
# "23D (Omicron)\n(XBB.1.9)": {
# "nonsynonymous": [
# "S:T19I",
# "S:L24-",
# "S:P25-",
# "S:P26-",
# "S:A27S",
# "S:V83A",
# "S:G142D",
# "S:Y144-",
# "S:H146Q",
# "S:Q183E",
# "S:V213E",
# "S:G252V",
# "S:G339H",
# "S:R346T",
# "S:L368I",
# "S:S371F",
# "S:S373P",
# "S:S375F",
# "S:T376A",
# "S:D405N",
# "S:R408S",
# "S:K417N",
# "S:N440K",
# "S:V445P",
# "S:G446S",
# "S:N460K",
# "S:S477N",
# "S:T478K",
# "S:E484A",
# "S:F486S",
# "S:F490S",
# "S:R493Q",
# "S:Q498R",
# "S:N501Y",
# "S:Y505H",
# "S:D614G",
# "S:H655Y",
# "S:N679K",
# "S:P681H",
# "S:N764K",
# "S:D796Y",
# "S:Q954H",
# "S:N969K",
# ]
# },
# "23E (Omicron)\n(XBB.2.3)": {
# "nonsynonymous": [
# "S:T19I",
# "S:L24-",
# "S:P25-",
# "S:P26-",
# "S:A27S",
# "S:V83A",
# "S:G142D",
# "S:Y144-",
# "S:H146Q",
# "S:Q183E",
# "S:V213E",
# "S:D253G",
# "S:G339H",
# "S:R346T",
# "S:L368I",
# "S:S371F",
# "S:S373P",
# "S:S375F",
# "S:T376A",
# "S:D405N",
# "S:R408S",
# "S:K417N",
# "S:N440K",
# "S:V445P",
# "S:G446S",
# "S:N460K",
# "S:S477N",
# "S:T478K",
# "S:E484A",
# "S:F486P",
# "S:F490S",
# "S:R493Q",
# "S:Q498R",
# "S:N501Y",
# "S:Y505H",
# "S:P521S",
# "S:D614G",
# "S:H655Y",
# "S:N679K",
# "S:P681H",
# "S:N764K",
# "S:D796Y",
# ]
# },
# "23F (Omicron)\n(EG.5.1)": {
# "nonsynonymous": [
# "S:T19I",
# "S:L24-",
# "S:P25-",
# "S:P26-",
# "S:A27S",
# "S:Q52H",
# "S:V83A",
# "S:G142D",
# "S:Y144-",
# "S:H146Q",
# "S:Q183E",
# "S:V213E",
# "S:G252V",
# "S:G339H",
# "S:R346T",
# "S:L368I",
# "S:S371F",
# "S:S373P",
# "S:S375F",
# "S:T376A",
# "S:D405N",
# "S:R408S",
# "S:K417N",
# "S:N440K",
# "S:V445P",
# "S:G446S",
# "S:F456L",
# "S:N460K",
# "S:S477N",
# "S:T478K",
# "S:E484A",
# "S:F486P",
# "S:F490S",
# "S:R493Q",
# "S:Q498R",
# "S:N501Y",
# "S:Y505H",
# "S:D614G",
# "S:H655Y",
# "S:N679K",
# "S:P681H",
# "S:N764K",
# "S:D796Y",
# "S:Q954H",
# "S:N969K",
# ]
# },
# "23G (Omicron)\n(XBB.1.5.70)": {
# "nonsynonymous": [
# "S:T19I",
# "S:L24-",
# "S:P25-",
# "S:P26-",
# "S:A27S",
# "S:V83A",
# "S:G142D",
# "S:Y144-",
# "S:H146Q",
# "S:Q183E",
# "S:V213E",
# "S:G252V",
# "S:G339H",
# "S:R346T",
# "S:L368I",
# "S:S371F",
# "S:S373P",
# "S:S375F",
# "S:T376A",
# "S:D405N",
# "S:R408S",
# "S:K417N",
# "S:N440K",
# "S:V445P",
# "S:G446S",
# "S:L455F",
# "S:F456L",
# "S:N460K",
# "S:S477N",
# "S:T478K",
# "S:E484A",
# "S:F486P",
# "S:F490S",
# "S:R493Q",
# "S:Q498R",
# "S:N501Y",
# "S:Y505H",
# "S:D614G",
# "S:H655Y",
# "S:N679K",
# "S:P681H",
# "S:N764K",
# "S:D796Y",
# "S:Q954H",
# "S:N969K",
# ]
# },
"23H (Omicron)\n(HK.3)": {
"nonsynonymous": [
"S:T19I",
"S:L24-",
"S:P25-",
"S:P26-",
"S:A27S",
"S:Q52H",
"S:V83A",
"S:G142D",
"S:Y144-",
"S:H146Q",
"S:Q183E",
"S:V213E",
"S:G252V",
"S:G339H",
"S:R346T",
"S:L368I",
"S:S371F",
"S:S373P",
"S:S375F",
"S:T376A",
"S:D405N",
"S:R408S",
"S:K417N",
"S:N440K",
"S:V445P",
"S:G446S",
"S:L455F",
"S:F456L",
"S:N460K",
"S:S477N",
"S:T478K",
"S:E484A",
"S:F486P",
"S:F486S",
"S:F490S",
"S:R493Q",
"S:Q498R",
"S:N501Y",
"S:Y505H",
"S:D614G",
"S:H655Y",
"S:N679K",
"S:P681H",
"S:N764K",
"S:D796Y",
"S:Q954H",
"S:N969K",
]
},
"23I (Omicron)\n(BA.2.86)": {
"nonsynonymous": [
"S:T19I",
"S:R21T",
"S:L24-",
"S:P25-",
"S:P26-",
"S:A27S",
"S:S50L",
"S:H69-",
"S:V70-",
"S:V127F",
"S:G142D",
"S:Y144-",
"S:F157S",
"S:R158G",
"S:R493Q",
"S:N211-",
"S:L212I",
"S:V213G",
"S:L216F",
"S:H245N",
"S:A264D",
"S:I332V",
"S:G339H",
"S:K356T",
"S:S371F",
"S:S373P",
"S:S375F",
"S:T376A",
"S:R403K",
"S:D405N",
"S:R408S",
"S:K417N",
"S:N440K",
"S:V445H",
"S:G446S",
"S:N450D",
"S:L452W",
"S:N460K",
"S:S477N",
"S:T478K",
"S:N481K",
"S:V483-",
"S:E484K",
"S:F486P",
"S:Q498R",
"S:N501Y",
"S:Y505H",
"S:E554K",
"S:A570V",
"S:D614G",
"S:P621S",
"S:H655Y",
"S:N679K",
"S:P681R",
"S:N764K",
"S:D796Y",
"S:S939F",
"S:Q954H",
"S:N969K",
"S:P1143L",
]
},
"24A (Omicron)\n(JN.1)": {
"nonsynonymous": [
"S:T19I",
"S:R21T",
"S:L24-",
"S:P25-",
"S:P26-",
"S:A27S",
"S:S50L",
"S:H69-",
"S:V70-",
"S:V127F",
"S:G142D",
"S:Y144-",
"S:F157S",
"S:R158G",
"S:R493Q",
"S:N211-",
"S:L212I",
"S:V213G",
"S:L216F",
"S:H245N",
"S:A264D",
"S:I332V",
"S:G339H",
"S:K356T",
"S:S371F",
"S:S373P",
"S:S375F",
"S:T376A",
"S:R403K",
"S:D405N",
"S:R408S",
"S:K417N",
"S:N440K",
"S:V445H",
"S:G446S",
"S:N450D",
"S:L452W",
"S:L455S",
"S:N460K",
"S:S477N",
"S:T478K",
"S:N481K",
"S:V483-",
"S:E484K",
"S:F486P",
"S:Q498R",
"S:N501Y",
"S:Y505H",
"S:E554K",
"S:A570V",
"S:D614G",
"S:P621S",
"S:H655Y",
"S:N679K",
"S:P681R",
"S:N764K",
"S:D796Y",
"S:S939F",
"S:Q954H",
"S:N969K",
"S:P1143L",
]
},
"24B (Omicron)\n(JN.1.11.1)": {
"nonsynonymous": [
"S:T19I",
"S:R21T",
"S:L24-",
"S:P25-",
"S:P26-",
"S:A27S",
"S:S50L",
"S:H69-",
"S:V70-",
"S:V127F",
"S:G142D",
"S:Y144-",
"S:F157S",
"S:R158G",
"S:R493Q",
"S:N211-",
"S:L212I",
"S:V213G",
"S:L216F",
"S:H245N",
"S:A264D",
"S:I332V",
"S:G339H",
"S:K356T",
"S:S371F",
"S:S373P",
"S:S375F",
"S:T376A",
"S:R403K",
"S:D405N",
"S:R408S",
"S:K417N",
"S:N440K",
"S:V445H",
"S:G446S",
"S:N450D",
"S:L452W",
"S:L455S",
"S:F456L",
"S:N460K",
"S:S477N",
"S:T478K",
"S:N481K",
"S:V483-",
"S:E484K",
"S:F486P",
"S:Q498R",
"S:N501Y",
"S:Y505H",
"S:E554K",
"S:A570V",
"S:D614G",
"S:P621S",
"S:H655Y",
"S:N679K",
"S:P681R",
"S:N764K",
"S:D796Y",
"S:S939F",
"S:Q954H",
"S:N969K",
"S:V1104L",
"S:P1143L",
]
},
"24C (Omicron)\n(KP.3)": {
"nonsynonymous": [
"S:T19I",
"S:R21T",
"S:L24-",
"S:P25-",
"S:P26-",
"S:A27S",
"S:S50L",
"S:H69-",
"S:V70-",
"S:V127F",
"S:G142D",
"S:Y144-",
"S:F157S",
"S:R158G",
"S:R493Q",
"S:N211-",
"S:L212I",
"S:V213G",
"S:L216F",
"S:H245N",
"S:A264D",
"S:I332V",
"S:G339H",
"S:K356T",
"S:S371F",
"S:S373P",
"S:S375F",
"S:T376A",
"S:R403K",
"S:D405N",
"S:R408S",
"S:K417N",
"S:N440K",
"S:V445H",
"S:G446S",
"S:N450D",
"S:L452W",
"S:L455S",
"S:F456L",
"S:N460K",
"S:S477N",
"S:T478K",
"S:N481K",
"S:V483-",