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BLCA-US_example_20220901.vcf
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BLCA-US_example_20220901.vcf
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##fileformat=VCFv4.2
##FILTER=<ID=PASS,Description="All filters passed">
##INFO=<ID=BAM,Number=.,Type=String,Description="BAM file name">
##INFO=<ID=gnomAD_AF,Number=1,Type=Float,Description="gnomAD population allele frequency">
##INFO=<ID=SOMATIC,Number=.,Type=Flag,Description="Somatic variant">
##INFO=<ID=flanking,Number=.,Type=String,Description="Ref and alt AD of left and right flanking variants">
##contig=<ID=1,length=249250621>
##contig=<ID=2,length=243199373>
##contig=<ID=3,length=198022430>
##contig=<ID=4,length=191154276>
##contig=<ID=5,length=180915260>
##contig=<ID=6,length=171115067>
##contig=<ID=7,length=159138663>
##contig=<ID=8,length=146364022>
##contig=<ID=9,length=141213431>
##contig=<ID=10,length=135534747>
##contig=<ID=11,length=135006516>
##contig=<ID=12,length=133851895>
##contig=<ID=13,length=115169878>
##contig=<ID=14,length=107349540>
##contig=<ID=15,length=102531392>
##contig=<ID=16,length=90354753>
##contig=<ID=17,length=81195210>
##contig=<ID=18,length=78077248>
##contig=<ID=19,length=59128983>
##contig=<ID=20,length=63025520>
##contig=<ID=21,length=48129895>
##contig=<ID=22,length=51304566>
##contig=<ID=X,length=155270560>
##contig=<ID=Y,length=59373566>
##contig=<ID=MT,length=16569>
#CHROM POS ID REF ALT QUAL FILTER INFO
1 148765987 . C A . . BAM=patient_4.bam;flanking=-1|-1|-1|-1|8|22|8|26
2 82727338 . A T . . BAM=patient_3.bam;SOMATIC;flanking=7|17|14|20|8|5|6|7
2 91734928 . AT A . . BAM=patient_3.bam;flanking=85|20|8|28|104|96|61|122
3 25035231 . GC G . . BAM=patient_4.bam;SOMATIC;flanking=5|25|18|27|10|26|6|22
3 101417397 . T C . . BAM=patient_2.bam;flanking=12|12|14|10|15|11|10|10
4 126332 . C T . . BAM=patient_2.bam;flanking=-1|-1|-1|-1|15|14|13|13
4 180719162 . G A . . BAM=patient_3.bam;SOMATIC;flanking=14|19|9|14|6|15|18|5
5 91191850 . TA T . . BAM=patient_3.bam;SOMATIC;flanking=15|13|14|16|12|17|11|10
5 118258961 . C A . . BAM=patient_1.bam;SOMATIC;flanking=29|17|16|12|18|11|10|24
5 144865168 . TGGCACTTCTGCGTGCCTGTGCTAA T . . BAM=patient_2.bam;SOMATIC;flanking=12|22|10|23|10|16|10|16
6 17601273 . G A . . BAM=patient_1.bam;flanking=8|16|12|8|6|13|10|17
6 44987320 . C G . . BAM=patient_1.bam;SOMATIC;flanking=17|12|7|8|11|16|5|5
6 63250363 . G A . . BAM=patient_1.bam;SOMATIC;flanking=8|11|15|16|8|16|14|12
6 100366220 . GGTATGATAATGAGTGCCTTCAAA G . . BAM=patient_2.bam;SOMATIC;flanking=12|16|13|10|9|11|9|7
7 91174311 . TTTATTTAGGGATTAGCAGAAACCC T . . BAM=patient_2.bam;SOMATIC;flanking=16|5|27|11|12|7|16|8
7 113988371 . TC T . . BAM=patient_3.bam;SOMATIC;flanking=26|12|19|10|25|8|13|9
7 141908920 . G A . . BAM=patient_3.bam;flanking=15|12|6|16|9|19|8|6
8 8058921 . C T . . BAM=patient_4.bam;flanking=29|7|29|6|20|8|8|5
8 77930581 . A AT . . BAM=patient_1.bam;SOMATIC;flanking=15|15|11|8|6|8|16|17
8 96849760 . C T . . BAM=patient_3.bam;SOMATIC;flanking=9|13|5|40|6|37|15|7
10 64296431 . CA C . . BAM=patient_3.bam;flanking=28|11|14|28|7|14|25|15
11 118575114 . TA T . . BAM=patient_2.bam;flanking=7|25|8|28|5|17|31|6
12 113389111 . C T . . BAM=patient_1.bam;flanking=19|34|12|21|25|14|17|16
12 123880119 . T TG . . BAM=patient_2.bam;flanking=21|21|16|9|7|11|23|28
14 76700280 . C T . . BAM=patient_1.bam;SOMATIC;flanking=15|27|25|16|16|20|21|27
14 82325453 . TA T . . BAM=patient_1.bam;flanking=19|18|12|21|22|23|10|6
14 89903531 . AAAAC A . . BAM=patient_3.bam;flanking=11|12|14|12|17|19|14|11
15 24480580 . C A . . BAM=patient_3.bam;SOMATIC;flanking=10|13|11|8|10|18|15|24
15 60937218 . TC T . . BAM=patient_3.bam;SOMATIC;flanking=18|13|11|20|20|15|12|22
17 26791884 . G C . . BAM=patient_4.bam;flanking=14|14|12|11|14|13|22|5
17 30462660 . T C . . BAM=patient_2.bam;flanking=31|45|24|23|24|26|26|37
19 10179564 . TC T . . BAM=patient_3.bam;SOMATIC;flanking=7|25|18|31|18|18|11|22
19 20911564 . CA C . . BAM=patient_2.bam;SOMATIC;flanking=15|33|13|32|6|7|18|12
19 21749673 . A ATC . . BAM=patient_3.bam;flanking=14|11|11|5|21|21|9|18
20 7752008 . G C . . BAM=patient_1.bam;SOMATIC;flanking=14|15|11|14|30|13|28|15
X 9422419 . A C . . BAM=patient_2.bam;flanking=15|6|16|5|14|5|5|6
X 76292493 . GTT G . . BAM=patient_1.bam;flanking=-1|-1|-1|-1|5|6|6|9
X 90286508 . C CAT . . BAM=patient_4.bam;flanking=20|6|14|15|30|14|24|14
X 97631971 . G T . . BAM=patient_1.bam;SOMATIC;flanking=21|23|14|5|12|7|-1|-1
X 146144298 . A AT . . BAM=patient_3.bam;flanking=-1|-1|-1|-1|-1|-1|-1|-1