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ref_file_example.txt
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Salmonella_enterica_salamae_VIII_74-1880 ./refs/74_1880.fasta
Salmonella_enterica_salamae_b_Ar0560 ./refs/Ar0560.fasta
Salmonella_enterica_houtenae_Type ./refs/NCTC10401.fasta
Salmonella_bongori_Type-NCTC12419 ./refs/S_bongoriType_NCTC12419.fasta
Salmonella_enterica_arizonae_Type ./refs/S_enterica_arizonaeType.fasta
Salmonella_enterica_diarizonae_Type ./refs/S_enterica_diarizonaeType.fasta
Salmonella_enterica_indica_Type ./refs/S_enterica_indicaType.fasta
Salmonella_enterica_salamae_Type ./refs/S_enterica_salamaeType.fasta
Salmonella_enterica_VII_SRR1060603 ./refs/SRR1060603_VII.fasta
Salmonella_enterica_enterica_Typhimurium-LT2 ./refs/Typhimurium_LT2.fasta
Campylobacter_jejuni_CJ677CC524 ./refs/Campylobacter_jejuni_CJ677CC524.fasta
E_coli_K_12_ER3413 ./refs/E_coli_K_12_ER3413.fasta
Escherichia_albertii_NIAH_Bird_3 ./refs/Escherichia_albertii_NIAH_Bird_3.fasta
Escherichia_fergusonii_ATCC35469 ./refs/Escherichia_fergusonii_ATCC35469.fasta
Yersinia_pestis_CO92 ./refs/Yersinia_pestis_CO92_chr.fasta
Listeria_monocytogenes_FSL_J1_208 ./refs/Listeria_monocytogenes_FSL_J1_208.fasta
Campylobacter_jejuni_jejuni_ATCC700819 ./refs/Campylobacter_jejuni_jejuni_ATCC700819.fasta
Citrobacter_amalonaticus_FDAARGOS_122 ./refs/Citrobacter_amalonaticus_FDAARGOS_122.fasta
Citrobacter_braakii_FDAARGOS_253 ./refs/Citrobacter_braakii_FDAARGOS_253.fasta
Citrobacter_farmeri_AUSMDU00008141 ./refs/Citrobacter_farmeri_AUSMDU00008141.fasta
Citrobacter_freundii_18_1 ./refs/Citrobacter_freundii_18_1.fasta
Citrobacter_koseri_ATCC_BAA-895 ./refs/Citrobacter_koseri_ATCC_BAA-895.fasta
Citrobacter_rodentium_ICC168 ./refs/Citrobacter_rodentium_ICC168.fasta
Citrobacter_werkmanii_FDAARGOS_364 ./refs/Citrobacter_werkmanii_FDAARGOS_364.fasta
Klebsiella_pneumoniae_DT12 ./refs/Klebsiella_pneumoniae_DT12_chr.fasta
Listeria_monocytogenes_EGDe ./refs/LmonoEGDe.fasta
Listeria_monocytogenes_F2365 ./refs/LmonoF23654b.fasta
Listeria_monocytogenes_HCC23 ./refs/LmonoHCC23.fasta
Citrobacter_pasteurii_55-13 ./refs/Citrobacter_pasteurii_55-13.fasta
Citrobacter_youngae_Type ./refs/Citrobacter_youngae_Type.fasta
Citrobacter_sedlakii_NBRC-105722 ./refs/Citrobacter_sedlakii_NBRC-105722.fasta
Citrobacter_gillenii_CIP-106783 ./refs/Citrobacter_gillenii_CIP-106783.fasta
Citrobacter_murliniae_CIP-104556 ./refs/Citrobacter_murliniae_CIP-104556.fasta
Staphylococcus_aureus_NCTC8532 ./refs/Staphylococcus_aureus_NCTC8532_2.fasta
Enterococcus_faecalis_V583 ./refs/Efaecalis_V583.fasta
Listeria_innocua_Clip11262 ./refs/Listeria_innocua_Clip11262.fasta
Listeria_ivanovii_ivanovii_NCTC11007 ./refs/Listeria_ivanovii_ivanovii_NCTC11007.fasta
Listeria_ivanovii_londoniensis_WSLC30151 ./refs/Listeria_ivanovii_londoniensis_WSLC30151.fasta
Listeria_marthii_S4_120 ./refs/Listeria_marthii_S4_120.fasta
Listeria_seeligeri_SLCC3954 ./refs/Listeria_seeligeri_SLCC3954.fasta
Listeria_welshimeri_NCTC11857 ./refs/Listeria_welshimeri_NCTC11857.fasta
Listeria_monocytogenes_SRR2167842 ./refs/SRR2167842_ST0.fasta
Yersinia_aldovae_670-83 ./refs/Yersinia_aldovae_670-83.fasta
Yersinia_enterocolitica_enterocolitica_8081 ./refs/Yersinia_enterocolitica_enterocolitica_8081.fasta
Yersinia_pseudotuberculosis_ATCC6904 ./refs/Yersinia_pseudotuberculosis_ATCC6904.fasta
Serratia_marcescens_marcescens_Db11 ./refs/Serratia_marcescens_marcescens_Db11.fasta