references.bib

@article{knuth84,
  author = {Knuth, Donald E.},
  title = {Literate Programming},
  year = {1984},
  issue_date = {May 1984},
  publisher = {Oxford University Press, Inc.},
  address = {USA},
  volume = {27},
  number = {2},
  issn = {0010-4620},
  url = {https://doi.org/10.1093/comjnl/27.2.97},
  doi = {10.1093/comjnl/27.2.97},
  journal = {Comput. J.},
  month = may,
  pages = {97–111},
  numpages = {15}
}

@Manual{R,
  title = {R: A Language and Environment for Statistical Computing},
  author = {{R Core Team}},
  organization = {R Foundation for Statistical Computing},
  address = {Vienna, Austria},
  year = {2023},
  url = {https://www.R-project.org/},
}

@Article{slurmRpaper,
  title = {slurmR: A lightweight wrapper for HPC with Slurm},
  author = {George {Vega Yon} and Paul Marjoram},
  journal = {The Journal of Open Source Software},
  year = {2019},
  month = {jul},
  volume = {4},
  number = {39},
  doi = {10.21105/joss.01493},
  url = {https://doi.org/10.21105/joss.01493},
}

@Manual{slurmRpkg,
  title = {{{slurmR: A Lightweight Wrapper for 'Slurm'}}},
  author = {George {Vega Yon} and Paul Marjoram},
  year = {2022},
  note = {R package version 0.5-2},
  url = {https://github.com/USCbiostats/slurmR},
}

 @article{Vega_Yon_Quistorff_2019, title={parallel: A command for parallel computing}, volume={19}, ISSN={1536-867X}, DOI={10.1177/1536867X19874242}, abstractNote={The parallel package allows parallel processing of tasks that are not interdependent. This allows all flavors of Stata to take advantage of multiprocessor machines. Even Stata/MP users can benefit because many community-contributed programs are not automatically parallelized but could be under our framework.}, number={3}, journal={The Stata Journal: Promoting communications on statistics and Stata}, author={Vega Yon, George G. Vega and Quistorff, Brian}, year={2019}, month={Sep}, pages={667–684} }

@Manual{datatable,
  title = {data.table: Extension of `data.frame`},
  author = {Matt Dowle and Arun Srinivasan},
  year = {2021},
  note = {R package version 1.14.2},
  url = {https://CRAN.R-project.org/package=data.table}
  }

 @misc{
  lumi2023,
  title={Documentation - Distribution and binding}, url={https://docs.lumi-supercomputer.eu/runjobs/scheduled-jobs/distribution-binding/}, abstractNote={Instructions, user guides and tutorials for the use of the LUMI supercomputer}, author={{LUMI consortium}}, language={en}, year=2023}

 @inbook{Yoo_Jette_Grondona_2003, address={Berlin, Heidelberg}, series={Lecture Notes in Computer Science}, title={SLURM: Simple Linux Utility for Resource Management}, volume={2862}, ISBN={978-3-540-20405-3}, url={http://link.springer.com/10.1007/10968987_3}, DOI={10.1007/10968987_3}, booktitle={Job Scheduling Strategies for Parallel Processing}, publisher={Springer Berlin Heidelberg}, author={Yoo, Andy B. and Jette, Morris A. and Grondona, Mark}, editor={Feitelson, Dror and Rudolph, Larry and Schwiegelshohn, Uwe}, year={2003}, pages={44–60}, collection={Lecture Notes in Computer Science} }


@Article{Eddelbuettel2011,
  title = {{Rcpp}: Seamless {R} and {C++} Integration},
  author = {Dirk Eddelbuettel and Romain Fran\c{c}ois},
  journal = {Journal of Statistical Software},
  year = {2011},
  volume = {40},
  number = {8},
  pages = {1--18},
  doi = {10.18637/jss.v040.i08},
}

@Book{RcppBook,
  title = {Seamless {R} and {C++} Integration with {Rcpp}},
  author = {Dirk Eddelbuettel},
  publisher = {Springer},
  address = {New York},
  year = {2013},
  note = {ISBN 978-1-4614-6867-7},
  doi = {10.1007/978-1-4614-6868-4},
}

@Article{Rcpp,
  title = {{Extending 	extit{R} with 	extit{C++}: A Brief Introduction to 	extit{Rcpp}}},
  author = {Dirk Eddelbuettel and James Joseph Balamuta},
  journal = {The American Statistician},
  year = {2018},
  volume = {72},
  number = {1},
  pages = {28-36},
  doi = {10.1080/00031305.2017.1375990},
}


@book{rue-albrechtWelcomeBioconductorPackages,
  title = {Welcome | {{Bioconductor Packages}}: {{Development}}, {{Maintenance}}, and {{Peer Review}}},
  shorttitle = {Welcome | {{Bioconductor Packages}}},
  author = {{Rue-Albrecht}, Kevin and Cassol, Daniela and Rainer, Johannes and Shepherd, Lori},
  urldate = {2023-05-02},
  abstract = {This is a minimal example of using the bookdown package to write a book. The output format for this example is bookdown::gitbook.},
  langid = {english},
  file = {/home/george/Zotero/storage/RPSRJTPT/index.html}
}