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The charge parameters are ignored when docking with aISS #825

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RaphaelRobidas opened this issue Jun 23, 2023 · 2 comments
Closed

The charge parameters are ignored when docking with aISS #825

RaphaelRobidas opened this issue Jun 23, 2023 · 2 comments
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@RaphaelRobidas
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Describe the bug
Specifying the --chrg or --chrg2 parameters does not set the charge.

To Reproduce

  1. Run the docking procedure: xtb dock Cl.xyz NH3.xyz --chrg -1
  2. Verify the charge in the calculation setup. It is still 0:
      -----------------------------------------------------------
     |                   =====================                   |
     |                          a I S S                          |
     |                   =====================                   |
     |               S. Ehlert, S. Grimme, C.Plett               |
     |          Mulliken Center for Theoretical Chemistry        |
     |                    University of Bonn                     |
      -----------------------------------------------------------

   * xtb-docking algorithm 6.6.0 (8843059) compiled by 'stahn@majestix' on 2023-02-09

 * started run on 2023/06/23 at 12:58:52.071     
 taking internal default parameters

           -------------------------------------------------
          |                Calculation Setup                |
           -------------------------------------------------

          program call               : xtb dock Cl.xyz NH3.xyz --chrg -1
          omp threads                :                    16
          coordinate file A          : Cl.xyz
          coordinate file B          : NH3.xyz
          number of atoms A          :                     1
          number of atoms B          :                     4
          charge of molecule A       :                   0.0
          charge of molecule B       :                   0.0
          spin of molecule A         :                     0
          spin of molecule B         :                     0
          first test random number   :      0.81772429240242

Files used in this run:
Cl.xyz

1

Cl 0.0 0.0 0.0

NH3.xyz

4

N          0.41850       -1.05150        0.00000
H          0.75180       -1.99430        0.00000
H          0.75180       -0.58010        0.81650
H          0.75180       -0.58010       -0.81650

To my knowledge, this bug occurs with any input file.

Expected behaviour
The charge parameter should set the charge.

@RaphaelRobidas RaphaelRobidas added the unconfirmed This report has not yet been confirmed by the developers label Jun 23, 2023
@cplett
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cplett commented Jul 12, 2023

Hi Raphael,
Thank you for pointing that out.
This was a problem of the xtb 6.6.0 release and was fixed with #771. Version 6.6.0 can however read in .CRHG and .UHF files correctly.

@cplett cplett added bug Something isn't working and removed unconfirmed This report has not yet been confirmed by the developers labels Jul 12, 2023
@MtoLStoN
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MtoLStoN commented Aug 2, 2023

This should be fixed in xTB 6.6.1. I will therefore close this Issue.

@MtoLStoN MtoLStoN closed this as completed Aug 2, 2023
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