From 9cf62d78c0ee8fdbb120013ed1b199b255a9d01f Mon Sep 17 00:00:00 2001 From: Daniel Himmelstein Date: Tue, 9 Oct 2018 20:42:08 -0400 Subject: [PATCH 1/5] Add Sloan foundation grant number https://sloan.org/grant-detail/8501 --- content/metadata.yaml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/content/metadata.yaml b/content/metadata.yaml index a82d7cca..c42d94b4 100644 --- a/content/metadata.yaml +++ b/content/metadata.yaml @@ -16,7 +16,7 @@ author_info: email: daniel.himmelstein@gmail.com affiliations: - Department of Systems Pharmacology and Translational Therapeutics, University of Pennsylvania - funders: GBMF4552 + funders: G-2018-11163 and GBMF4552 - github: slochower name: David R. Slochower @@ -46,7 +46,7 @@ author_info: email: csgreene@upenn.edu affiliations: - Department of Systems Pharmacology and Translational Therapeutics, University of Pennsylvania - funders: GBMF4552 + funders: G-2018-11163 and GBMF4552 - github: agitter name: Anthony Gitter From fbf972315c5978fa9551b8c3ee0dbddcdfbd1c1b Mon Sep 17 00:00:00 2001 From: Daniel Himmelstein Date: Thu, 18 Oct 2018 15:15:42 -0400 Subject: [PATCH 2/5] Add funding section to back-matter --- content/99.back-matter.md | 6 +++++- 1 file changed, 5 insertions(+), 1 deletion(-) diff --git a/content/99.back-matter.md b/content/99.back-matter.md index 5fce813e..70d09849 100644 --- a/content/99.back-matter.md +++ b/content/99.back-matter.md @@ -1,10 +1,14 @@ -## Acknowledgements +## Acknowledgments We would like to thank the authors of the Deep Review who helped us test collaborative writing with Manubot. The authors who responded favorably to being acknowledged are Paul-Michael Agapow, Amr M. Alexandari, Brett K. Beaulieu-Jones, Anne E. Carpenter, Travers Ching, Evan M. Cofer, Dave DeCaprio, Brian T. Do, Enrico Ferrero, David J. Harris, Michael M. Hoffman, Alexandr A. Kalinin, Anshul Kundaje, Jack Lanchantin, Christopher A. Lavender, Benjamin J. Lengerich, Zhiyong Lu, Yifan Peng, Yanjun Qi, Gail L. Rosen, Avanti Shrikumar, Srinivas C. Turaga, Gregory P. Way, Laura K. Wiley, Stephen Woloszynek, Wei Xie, Jinbo Xu, and Michael Zietz. In addition, we thank Ogun Adebali, Evan M. Cofer, and Robert Gieseke for contributing to the Manubot template manuscript. We are grateful for additional Manubot discussion and testing by Alexander Dunkel, Ansel Halliburton, Achintya Rao, and other GitHub users. +## Funding + +This work was supported by the Alfred P. Sloan Foundation in [Grant G-2018-11163](https://sloan.org/grant-detail/8501) to DSH and the Gordon & Betty Moore Foundation in [Grant GBMF4552](https://www.moore.org/grant-detail?grantId=GBMF4552) to CSG. + ## References {.page_break_before} From d22273387187693254c2d3e6217f4120675eda6b Mon Sep 17 00:00:00 2001 From: Daniel Himmelstein Date: Fri, 19 Oct 2018 11:06:03 -0400 Subject: [PATCH 3/5] Revise funding statement to omit PI mentions --- content/99.back-matter.md | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/content/99.back-matter.md b/content/99.back-matter.md index 70d09849..27ea7a18 100644 --- a/content/99.back-matter.md +++ b/content/99.back-matter.md @@ -7,7 +7,8 @@ We are grateful for additional Manubot discussion and testing by Alexander Dunke ## Funding -This work was supported by the Alfred P. Sloan Foundation in [Grant G-2018-11163](https://sloan.org/grant-detail/8501) to DSH and the Gordon & Betty Moore Foundation in [Grant GBMF4552](https://www.moore.org/grant-detail?grantId=GBMF4552) to CSG. +DSH and CSG were supported by [Grant G-2018-11163](https://sloan.org/grant-detail/8501) from the Alfred P. Sloan Foundation and [Grant GBMF4552](https://www.moore.org/grant-detail?grantId=GBMF4552) from the Gordon & Betty Moore Foundation. +VSM was supported by [Grant RP150596](http://www.cprit.state.tx.us/files/funded-grants/RP150596.pdf) from the Cancer Prevention and Research Institute of Texas. ## References {.page_break_before} From e9a52628eb9f37b7fb2d71a143dacd27d7e17cbb Mon Sep 17 00:00:00 2001 From: Daniel Himmelstein Date: Fri, 19 Oct 2018 11:10:09 -0400 Subject: [PATCH 4/5] Suppress funders templating in front-matter --- content/00.front-matter.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/content/00.front-matter.md b/content/00.front-matter.md index c438b3dc..9da0b056 100644 --- a/content/00.front-matter.md +++ b/content/00.front-matter.md @@ -42,7 +42,7 @@ on {{date}}. {%- if author.affiliations is defined %} {{author.affiliations | join('; ')}} {%- endif %} - {%- if author.funders is defined %} + {%- if false and author.funders is defined %} ยท Funded by {{author.funders}} {%- endif %} From 61bc863e5bdc7c6bf69e7b9368bda61b9bfb4093 Mon Sep 17 00:00:00 2001 From: Daniel Himmelstein Date: Fri, 19 Oct 2018 11:12:55 -0400 Subject: [PATCH 5/5] consistent ampersand / and --- content/99.back-matter.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/content/99.back-matter.md b/content/99.back-matter.md index 27ea7a18..5bf05013 100644 --- a/content/99.back-matter.md +++ b/content/99.back-matter.md @@ -7,7 +7,7 @@ We are grateful for additional Manubot discussion and testing by Alexander Dunke ## Funding -DSH and CSG were supported by [Grant G-2018-11163](https://sloan.org/grant-detail/8501) from the Alfred P. Sloan Foundation and [Grant GBMF4552](https://www.moore.org/grant-detail?grantId=GBMF4552) from the Gordon & Betty Moore Foundation. +DSH and CSG were supported by [Grant G-2018-11163](https://sloan.org/grant-detail/8501) from the Alfred P. Sloan Foundation and [Grant GBMF4552](https://www.moore.org/grant-detail?grantId=GBMF4552) from the Gordon and Betty Moore Foundation. VSM was supported by [Grant RP150596](http://www.cprit.state.tx.us/files/funded-grants/RP150596.pdf) from the Cancer Prevention and Research Institute of Texas. ## References {.page_break_before}