From 5b5c566f185602c1baa49d719043547f80ccb1cf Mon Sep 17 00:00:00 2001
From: S Anand <root.node@gmail.com>
Date: Wed, 11 Jan 2023 19:49:05 +0800
Subject: [PATCH 01/18] ENH: Add a base Linux setup instance

---
 pkg/setup.sh | 117 +++++++++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 117 insertions(+)
 create mode 100644 pkg/setup.sh

diff --git a/pkg/setup.sh b/pkg/setup.sh
new file mode 100644
index 00000000..f6873cfb
--- /dev/null
+++ b/pkg/setup.sh
@@ -0,0 +1,117 @@
+# !/bin/bash
+
+# TODO: Anaconda version should be a variable
+# TODO: Consider miniconda instead of Anaconda
+# Set the repo URL for the anaconda download
+repo_url="https://repo.anaconda.com/archive/Anaconda3-2022.10-Linux-x86_64.sh"
+
+# Check if the user is the root user
+if [ "$(id -u)" -ne 0 ]; then
+  # If the user is not the root user, set the prefix to "sudo"
+  # TODO: Prefer "doas" for alpine / Docker
+  prefix="sudo"
+else
+  # If the user is the root user, set the prefix to an empty string
+  prefix=""
+fi
+
+# TODO: Set up distro-specific scripts for Debian, CentOS, Alpine, etc.
+# TODO: Based on the distro, call the relevant one
+# Set the package manager to use
+distro=$(awk -F= '/^NAME/{print $2}' /etc/os-release)
+if [[ $distro =~ "Debian" ]]; then
+  echo "OS found is Debian"
+  package_manager=apt
+  package_type=deb
+  user=admin
+elif [[ $distro =~ "CentOS" ]]; then
+  echo "OS found is CentOS"
+  package_manager=yum
+  package_type=rpm
+  user=centos
+else
+  # Print an error message if the package manager is not recognized
+  echo "Error: Unable to determine package manager"
+  exit 1
+fi
+
+# Update the package manager listing
+echo "Update the package registries list"
+echo "$prefix $package_manager update -y"
+$prefix $package_manager update -y
+
+# If curl is not installed, install it
+if ! command -v curl > /dev/null 2>&1; then
+  echo "$prefix $package_manager install -y curl"
+  $prefix $package_manager install -y curl
+fi
+echo "curl ${repo_url} -o /tmp/conda.sh"
+curl $repo_url -o /tmp/conda.sh
+
+# Run the Anaconda installer with the '-b' flag to run it in batch mode without prompts
+echo "bash /tmp/conda.sh -b"
+bash /tmp/conda.sh -b
+
+# TODO: You might be able to eliminate this via `/path/to/conda init && source .bashrc`
+# Add Anaconda to the PATH
+echo "Setting environment variable for anaconda"
+$prefix echo 'export PATH="/home/${user}/anaconda3/bin:$PATH"' >> /home/$user/.bashrc
+$prefix echo ". /home/${user}/anaconda3/etc/profile.d/conda.sh" >> /home/$user/.bashrc
+$prefix echo "conda activate base" >> /home/$user/.bashrc
+# Activate the base environment
+echo "source /home/$user/.bashrc"
+source /home/$user/.bashrc
+if [ "$package_type" == "deb" ]; then
+  # Activating conda environment in debian
+  echo "Activating conda environment in debian"
+  source /home/$user/anaconda3/bin/activate base
+fi
+
+echo "conda --version"
+conda --version
+echo "python --version"
+python --version
+echo "pip --version"
+pip --version
+echo "pip install --upgrade pip"
+pip install --upgrade pip
+
+# remove installation file
+
+echo "$prefix rm -rf /tmp/conda.sh"
+$prefix rm -rf /tmp/conda.sh
+
+# TODO: Allow the user to specify version of Gramex
+# Install Gramex
+GRAMEX_VERSION=1.86.1
+pip install gramex<="$GRAMEX_VERSION" gramexenterprise<="$GRAMEX_VERSION"
+pip cache purge
+
+# Accept the Gramex Enterprise license
+gramex license accept && \
+
+# install Nodejs
+echo "Installing Nodejs"
+curl -sL <https://${package_type}.nodesource.com/setup_16.x> | sudo bash -
+
+# TODO: Add the following dependencies
+# # icu-data-full is required for comicgen -> fontkit to run TextDecoder('ascii')
+# #   https://build.alpinelinux.org/buildlogs/build-edge-x86/main/nodejs/nodejs-16.18.0-r1.log
+# icu-data-full \
+# # Install dependencies for Chromium on Alpine
+# chromium nss freetype harfbuzz ca-certificates ttf-freefont &&
+$prefix $package_manager install -y gcc g++ make nodejs
+
+echo "node --version"
+node --version
+echo "npm --version"
+npm --version
+
+# Allow `npm install -g` to work without sudo by installing to ~/.npm-packages
+mkdir -p ~/.npm-packages && \
+npm config set prefix "${HOME_DIR}/.npm-packages" && \
+
+gramex setup --all
+
+# Clean up npm cache
+npm cache clean --force

From 85f6bc7793996cf9b487c9a872b2cc696870f3ed Mon Sep 17 00:00:00 2001
From: S Anand <root.node@gmail.com>
Date: Wed, 11 Jan 2023 19:51:32 +0800
Subject: [PATCH 02/18] TST: add test instructions

---
 pkg/testing.md | 10 ++++++++++
 1 file changed, 10 insertions(+)
 create mode 100644 pkg/testing.md

diff --git a/pkg/testing.md b/pkg/testing.md
new file mode 100644
index 00000000..0b2ebd39
--- /dev/null
+++ b/pkg/testing.md
@@ -0,0 +1,10 @@
+# Testing setup
+
+To test this on Ubuntu:
+
+```bash
+docker run -it --rm -v $(pwd):/app -w /app ubuntu bash
+
+# add user
+./pkg/setup.sh
+```

From d9d92c57f535012a67374be3829867401ed90cfd Mon Sep 17 00:00:00 2001
From: Shraddheya Shrivastava <shraddheya.shrivastava@gmail.com>
Date: Wed, 11 Jan 2023 21:02:58 +0530
Subject: [PATCH 03/18] adding test runnign steps

---
 pkg/setup.sh   | 80 +++++++++++++++++++++++++++++++-------------------
 pkg/testing.md | 35 ++++++++++++++++++----
 2 files changed, 80 insertions(+), 35 deletions(-)

diff --git a/pkg/setup.sh b/pkg/setup.sh
index f6873cfb..33026841 100644
--- a/pkg/setup.sh
+++ b/pkg/setup.sh
@@ -1,5 +1,14 @@
 # !/bin/bash
 
+# Declare an associative array for OS-specific default users
+declare -A users_map
+
+# Set the default users for each OS
+users_map["ubuntu"]="ubuntu"
+users_map["debian"]="admin"
+users_map["centos"]="centos"
+users_map["alpine"]="root"
+
 # TODO: Anaconda version should be a variable
 # TODO: Consider miniconda instead of Anaconda
 # Set the repo URL for the anaconda download
@@ -15,57 +24,67 @@ else
   prefix=""
 fi
 
+
 # TODO: Set up distro-specific scripts for Debian, CentOS, Alpine, etc.
 # TODO: Based on the distro, call the relevant one
 # Set the package manager to use
-distro=$(awk -F= '/^NAME/{print $2}' /etc/os-release)
-if [[ $distro =~ "Debian" ]]; then
-  echo "OS found is Debian"
-  package_manager=apt
+if command -v apt-get > /dev/null 2>&1; then
+  echo "The OS supports 'apt'."
+  echo "Updating the pakcage indices."
   package_type=deb
-  user=admin
-elif [[ $distro =~ "CentOS" ]]; then
-  echo "OS found is CentOS"
+  package_manager=apt
+  $prefix apt update -qq -y
+elif command -v yum > /dev/null 2>&1; then
+  echo "The OS supports 'yum'"
+  package_type=rpm
   package_manager=yum
+elif command -v dnf > /dev/null 2>&1; then
+  echo "The OS supports 'dnf'"
   package_type=rpm
-  user=centos
+  package_manager=dnf
 else
-  # Print an error message if the package manager is not recognized
   echo "Error: Unable to determine package manager"
   exit 1
 fi
 
-# Update the package manager listing
-echo "Update the package registries list"
-echo "$prefix $package_manager update -y"
-$prefix $package_manager update -y
+# Read the ID field from /etc/os-release
+os_id=$(grep ^ID= /etc/os-release | awk -F= '{ print $2 }')
+
+# Remove the surrounding quotes from the ID string
+os_id="${os_id%\"}"
+os_id="${os_id#\"}"
+
+# Set the user variable to the default user for the current OS
+user=${users_map[$os_id]}
+echo "The Os detected is '${os_id}', hence the default user is '${user}'"
 
 # If curl is not installed, install it
 if ! command -v curl > /dev/null 2>&1; then
   echo "$prefix $package_manager install -y curl"
   $prefix $package_manager install -y curl
 fi
-echo "curl ${repo_url} -o /tmp/conda.sh"
+echo "Download anaconda installer\ncurl ${repo_url} -o /tmp/conda.sh"
 curl $repo_url -o /tmp/conda.sh
 
 # Run the Anaconda installer with the '-b' flag to run it in batch mode without prompts
-echo "bash /tmp/conda.sh -b"
+echo "Install Anaconda\nbash /tmp/conda.sh -b"
 bash /tmp/conda.sh -b
 
-# TODO: You might be able to eliminate this via `/path/to/conda init && source .bashrc`
 # Add Anaconda to the PATH
-echo "Setting environment variable for anaconda"
-$prefix echo 'export PATH="/home/${user}/anaconda3/bin:$PATH"' >> /home/$user/.bashrc
-$prefix echo ". /home/${user}/anaconda3/etc/profile.d/conda.sh" >> /home/$user/.bashrc
-$prefix echo "conda activate base" >> /home/$user/.bashrc
-# Activate the base environment
-echo "source /home/$user/.bashrc"
+/home/${user}/anaconda3/bin/conda init bash
 source /home/$user/.bashrc
-if [ "$package_type" == "deb" ]; then
-  # Activating conda environment in debian
-  echo "Activating conda environment in debian"
-  source /home/$user/anaconda3/bin/activate base
-fi
+# TODO: You might be able to eliminate this via `/path/to/conda init && source .bashrc`
+# echo "Setting environment variable for anaconda"
+# $prefix echo 'export PATH="/home/${user}/anaconda3/bin:$PATH"' >> /home/$user/.bashrc
+# $prefix echo ". /home/${user}/anaconda3/etc/profile.d/conda.sh" >> /home/$user/.bashrc
+# $prefix echo "conda activate base" >> /home/$user/.bashrc
+# # Activate the base environment
+# echo "source /home/$user/.bashrc"
+# if [ "$package_type" == "deb" ]; then
+#   # Activating conda environment in debian
+#   echo "Activating conda environment in debian"
+#   source /home/$user/anaconda3/bin/activate base
+# fi
 
 echo "conda --version"
 conda --version
@@ -83,12 +102,13 @@ $prefix rm -rf /tmp/conda.sh
 
 # TODO: Allow the user to specify version of Gramex
 # Install Gramex
-GRAMEX_VERSION=1.86.1
-pip install gramex<="$GRAMEX_VERSION" gramexenterprise<="$GRAMEX_VERSION"
+echo "GRAMEX_VERSION=\"1.86.1\" pip install gramex<=\"${GRAMEX_VERSION}\" gramexenterprise<=\"${GRAMEX_VERSION}\""
+GRAMEX_VERSION="1.86.1"
+pip install "gramex<=${GRAMEX_VERSION}" "gramexenterprise<=${GRAMEX_VERSION}"
 pip cache purge
 
 # Accept the Gramex Enterprise license
-gramex license accept && \
+gramex license accept
 
 # install Nodejs
 echo "Installing Nodejs"
diff --git a/pkg/testing.md b/pkg/testing.md
index 0b2ebd39..4d76fd9b 100644
--- a/pkg/testing.md
+++ b/pkg/testing.md
@@ -2,9 +2,34 @@
 
 To test this on Ubuntu:
 
-```bash
-docker run -it --rm -v $(pwd):/app -w /app ubuntu bash
+- Disable path conversion in ***GIT BASH*** (only if using git bash)
 
-# add user
-./pkg/setup.sh
-```
+  ```sh
+  export MSYS_NO_PATHCONV=1 
+  ```
+
+- Run docker ubuntu container
+
+  ```sh
+  docker run --rm -itv $(pwd):/app -w /app ubuntu:latest bash
+  ```
+
+- Create default user and activate that user in docker ubuntu shell
+
+  ```sh
+  # Install sudo
+  apt update -y && apt install -y sudo
+  # Create user
+  export user=ubuntu
+  adduser --disabled-password --gecos "" ${user}
+  usermod -aG sudo ${user}
+  echo "${user} ALL=(ALL) NOPASSWD: ALL" | tee /etc/sudoers.d/${user}
+  # Activate user
+  su - ubuntu
+  ```
+
+- Test the installer script
+
+  ```sh
+  /app/pkg/setup.sh
+  ```

From 51e75dbfc0167ea53e48cc7702b4260fb266f500 Mon Sep 17 00:00:00 2001
From: Shraddheya <shraddheya.shrivsatava@gmail.com>
Date: Wed, 11 Jan 2023 17:39:54 +0000
Subject: [PATCH 04/18] adding working script changes

---
 pkg/setup.sh | 19 ++++++++-----------
 1 file changed, 8 insertions(+), 11 deletions(-)
 mode change 100644 => 100755 pkg/setup.sh

diff --git a/pkg/setup.sh b/pkg/setup.sh
old mode 100644
new mode 100755
index 33026841..a272c0c6
--- a/pkg/setup.sh
+++ b/pkg/setup.sh
@@ -71,20 +71,16 @@ echo "Install Anaconda\nbash /tmp/conda.sh -b"
 bash /tmp/conda.sh -b
 
 # Add Anaconda to the PATH
+echo "initiate anaconda \n/home/${user}/anaconda3/bin/conda init bash"
 /home/${user}/anaconda3/bin/conda init bash
-source /home/$user/.bashrc
-# TODO: You might be able to eliminate this via `/path/to/conda init && source .bashrc`
-# echo "Setting environment variable for anaconda"
+echo "Setting environment variable for anaconda"
 # $prefix echo 'export PATH="/home/${user}/anaconda3/bin:$PATH"' >> /home/$user/.bashrc
 # $prefix echo ". /home/${user}/anaconda3/etc/profile.d/conda.sh" >> /home/$user/.bashrc
 # $prefix echo "conda activate base" >> /home/$user/.bashrc
-# # Activate the base environment
-# echo "source /home/$user/.bashrc"
-# if [ "$package_type" == "deb" ]; then
-#   # Activating conda environment in debian
-#   echo "Activating conda environment in debian"
-#   source /home/$user/anaconda3/bin/activate base
-# fi
+source /home/${user}/.bashrc
+# Activate the base environment
+echo "Activating conda environment in debian"
+source /home/$user/anaconda3/bin/activate base
 
 echo "conda --version"
 conda --version
@@ -112,7 +108,8 @@ gramex license accept
 
 # install Nodejs
 echo "Installing Nodejs"
-curl -sL <https://${package_type}.nodesource.com/setup_16.x> | sudo bash -
+echo "package_type: ${package_type}"
+curl -sL https://${package_type}.nodesource.com/setup_16.x | sudo bash -
 
 # TODO: Add the following dependencies
 # # icu-data-full is required for comicgen -> fontkit to run TextDecoder('ascii')

From e5bcd3d3bb38bef49f9624c434fede52073b36e7 Mon Sep 17 00:00:00 2001
From: Shraddheya <shraddheya.shrivsatava@gmail.com>
Date: Wed, 11 Jan 2023 17:40:09 +0000
Subject: [PATCH 05/18] adding support for centos 7

---
 pkg/testing.md | 36 ++++++++++++++++++++++++++++++++++--
 1 file changed, 34 insertions(+), 2 deletions(-)

diff --git a/pkg/testing.md b/pkg/testing.md
index 4d76fd9b..f731fec6 100644
--- a/pkg/testing.md
+++ b/pkg/testing.md
@@ -1,6 +1,6 @@
 # Testing setup
 
-To test this on Ubuntu:
+Tesing the installer script in multiple platforms using docker containers
 
 - Disable path conversion in ***GIT BASH*** (only if using git bash)
 
@@ -8,6 +8,8 @@ To test this on Ubuntu:
   export MSYS_NO_PATHCONV=1 
   ```
 
+## Ubuntu:
+
 - Run docker ubuntu container
 
   ```sh
@@ -25,11 +27,41 @@ To test this on Ubuntu:
   usermod -aG sudo ${user}
   echo "${user} ALL=(ALL) NOPASSWD: ALL" | tee /etc/sudoers.d/${user}
   # Activate user
-  su - ubuntu
+  su - ${user}
+  ```
+
+- Test the installer script
+
+  ```sh
+  chmod +x /app/pkg/setup.sh
+  /app/pkg/setup.sh
+  ```
+
+## Centos 7:
+
+- Run docker ubuntu container
+
+  ```sh
+  docker run --rm -itv $(pwd):/app -w /app centos:7 bash
+  ```
+
+- Create default user and activate that user in docker ubuntu shell
+
+  ```sh
+  # Install sudo
+  yum install -y sudo
+  # Create user
+  export user=centos
+  useradd -m -p '' ${user}
+  usermod -aG wheel ${user}
+  echo "${user} ALL=(ALL) NOPASSWD: ALL" | tee /etc/sudoers.d/${user}
+  # Activate user
+  su - ${user}
   ```
 
 - Test the installer script
 
   ```sh
+  chmod +x /app/pkg/setup.sh
   /app/pkg/setup.sh
   ```

From 83cc7238d300aaad8a7f80ac07ba3ddc4f49c2ac Mon Sep 17 00:00:00 2001
From: Shraddheya <shraddheya.shrivsatava@gmail.com>
Date: Wed, 11 Jan 2023 18:01:07 +0000
Subject: [PATCH 06/18] adding support for amazon linux 2

---
 pkg/setup.sh   |  1 +
 pkg/testing.md | 30 ++++++++++++++++++++++++++++++
 2 files changed, 31 insertions(+)

diff --git a/pkg/setup.sh b/pkg/setup.sh
index a272c0c6..12774d62 100755
--- a/pkg/setup.sh
+++ b/pkg/setup.sh
@@ -7,6 +7,7 @@ declare -A users_map
 users_map["ubuntu"]="ubuntu"
 users_map["debian"]="admin"
 users_map["centos"]="centos"
+users_map["amzn"]="ec2-user"
 users_map["alpine"]="root"
 
 # TODO: Anaconda version should be a variable
diff --git a/pkg/testing.md b/pkg/testing.md
index f731fec6..0b80bac2 100644
--- a/pkg/testing.md
+++ b/pkg/testing.md
@@ -65,3 +65,33 @@ Tesing the installer script in multiple platforms using docker containers
   chmod +x /app/pkg/setup.sh
   /app/pkg/setup.sh
   ```
+
+## amazonlinux 2:
+
+- Run docker ubuntu container
+
+  ```sh
+  docker run --rm -itv $(pwd):/app -w /app amazonlinux:2 bash
+  ```
+
+- Create default user and activate that user in docker ubuntu shell
+
+  ```sh
+  # Install sudo
+  yum install -y sudo shadow-utils util-linux
+
+  # Create user
+  export user=ec2-user
+  useradd -m -p '' ${user}
+  usermod -aG wheel ${user}
+  echo "${user} ALL=(ALL) NOPASSWD: ALL" | tee /etc/sudoers.d/${user}
+  # Activate user
+  su - ${user}
+  ```
+
+- Test the installer script
+
+  ```sh
+  chmod +x /app/pkg/setup.sh
+  /app/pkg/setup.sh
+  ```

From 94f917852cf1a365763d959f8e5780463acc5008 Mon Sep 17 00:00:00 2001
From: Shraddheya <shraddheya.shrivsatava@gmail.com>
Date: Wed, 11 Jan 2023 18:04:03 +0000
Subject: [PATCH 07/18] grammar correction

---
 pkg/testing.md | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkg/testing.md b/pkg/testing.md
index 0b80bac2..bffd7f4f 100644
--- a/pkg/testing.md
+++ b/pkg/testing.md
@@ -39,7 +39,7 @@ Tesing the installer script in multiple platforms using docker containers
 
 ## Centos 7:
 
-- Run docker ubuntu container
+- Run docker Centos container
 
   ```sh
   docker run --rm -itv $(pwd):/app -w /app centos:7 bash
@@ -68,7 +68,7 @@ Tesing the installer script in multiple platforms using docker containers
 
 ## amazonlinux 2:
 
-- Run docker ubuntu container
+- Run docker Amazon linux container
 
   ```sh
   docker run --rm -itv $(pwd):/app -w /app amazonlinux:2 bash

From 869433f8c136bef6fc8ddafe56e286cba444dcda Mon Sep 17 00:00:00 2001
From: Shraddheya <shraddheya.shrivsatava@gmail.com>
Date: Wed, 11 Jan 2023 18:14:25 +0000
Subject: [PATCH 08/18] exit script if not ran from bash

---
 pkg/setup.sh | 6 +++++-
 1 file changed, 5 insertions(+), 1 deletion(-)

diff --git a/pkg/setup.sh b/pkg/setup.sh
index 12774d62..db7b58ce 100755
--- a/pkg/setup.sh
+++ b/pkg/setup.sh
@@ -1,5 +1,10 @@
 # !/bin/bash
 
+if [ -z "$BASH_VERSION" ]; then
+  echo "This script must be run in Bash. Exiting now."
+  exit 1
+fi
+
 # Declare an associative array for OS-specific default users
 declare -A users_map
 
@@ -8,7 +13,6 @@ users_map["ubuntu"]="ubuntu"
 users_map["debian"]="admin"
 users_map["centos"]="centos"
 users_map["amzn"]="ec2-user"
-users_map["alpine"]="root"
 
 # TODO: Anaconda version should be a variable
 # TODO: Consider miniconda instead of Anaconda

From cee0568726b3163dbdf6be7235aa9a9c2e8228f8 Mon Sep 17 00:00:00 2001
From: Shraddheya <shraddheya.shrivsatava@gmail.com>
Date: Wed, 11 Jan 2023 18:16:13 +0000
Subject: [PATCH 09/18] adding template for alpine

---
 pkg/testing.md | 17 +++++++++++++++++
 1 file changed, 17 insertions(+)

diff --git a/pkg/testing.md b/pkg/testing.md
index bffd7f4f..bf6dc55c 100644
--- a/pkg/testing.md
+++ b/pkg/testing.md
@@ -95,3 +95,20 @@ Tesing the installer script in multiple platforms using docker containers
   chmod +x /app/pkg/setup.sh
   /app/pkg/setup.sh
   ```
+
+## Alpine:
+
+- Run docker Amazon linux container
+
+  ```sh
+  docker run --rm -itv $(pwd):/app -w /app alpine:latest sh
+  ```
+
+> TODO: Create a `sh` script that runs in `shell` not `bash`
+
+- Test the installer script
+
+  ```sh
+  chmod +x /app/pkg/setup_sh.sh
+  /app/pkg/setup_sh.sh
+  ```

From 2775b89624c9010fb4dd7bcb3bca638d24858533 Mon Sep 17 00:00:00 2001
From: Shraddheya Shrivastava <shraddheya.shrivastava@gmail.com>
Date: Wed, 11 Jan 2023 23:49:41 +0530
Subject: [PATCH 10/18] lint correction

---
 pkg/testing.md | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/pkg/testing.md b/pkg/testing.md
index bf6dc55c..000666f1 100644
--- a/pkg/testing.md
+++ b/pkg/testing.md
@@ -8,7 +8,7 @@ Tesing the installer script in multiple platforms using docker containers
   export MSYS_NO_PATHCONV=1 
   ```
 
-## Ubuntu:
+## Ubuntu
 
 - Run docker ubuntu container
 
@@ -37,7 +37,7 @@ Tesing the installer script in multiple platforms using docker containers
   /app/pkg/setup.sh
   ```
 
-## Centos 7:
+## Centos 7
 
 - Run docker Centos container
 
@@ -66,7 +66,7 @@ Tesing the installer script in multiple platforms using docker containers
   /app/pkg/setup.sh
   ```
 
-## amazonlinux 2:
+## amazonlinux 2
 
 - Run docker Amazon linux container
 
@@ -96,7 +96,7 @@ Tesing the installer script in multiple platforms using docker containers
   /app/pkg/setup.sh
   ```
 
-## Alpine:
+## Alpine
 
 - Run docker Amazon linux container
 

From d7256befb857951d55c2ebb75e0ae4c38e0431e1 Mon Sep 17 00:00:00 2001
From: Shraddheya <shraddheya.shrivsatava@gmail.com>
Date: Thu, 12 Jan 2023 06:20:34 +0000
Subject: [PATCH 11/18] converted the script to posix

---
 pkg/setup.sh | 126 ++++++++++++++++++++++++++++++++++-----------------
 1 file changed, 85 insertions(+), 41 deletions(-)

diff --git a/pkg/setup.sh b/pkg/setup.sh
index db7b58ce..53c401a4 100755
--- a/pkg/setup.sh
+++ b/pkg/setup.sh
@@ -1,23 +1,75 @@
-# !/bin/bash
+#!/bin/sh
 
 if [ -z "$BASH_VERSION" ]; then
   echo "This script must be run in Bash. Exiting now."
   exit 1
 fi
 
-# Declare an associative array for OS-specific default users
-declare -A users_map
+# Use environment variable to emulate associative array
+users_map_ubuntu="ubuntu"
+users_map_debian="admin"
+users_map_centos="centos"
+users_map_amzn="ec2-user"
+
+ALLOWED_VERSIONS=("3.7" "3.9")
+while [[ $# -gt 0 ]]; do
+  key="$1"
+
+  case $key in
+  -d | --default)
+    VERSION=3.9
+    GRAMEX_VERSION=1.86.1
+    shift # past argument
+    ;;
+  -v | --version)
+    VERSION="$2"
+    if [[ ! " ${ALLOWED_VERSIONS[@]} " =~ " ${VERSION} " ]]; then
+      echo "Error: python versions must be set to one of the following values: ${ALLOWED_VERSIONS[*]}"
+      exit 1
+    fi
+
+    shift # past argument
+    shift # past value
+    ;;
+  -g | --gramex)
+    GRAMEX_VERSION="$2"
+    shift # past argument
+    shift # past value
+    ;;
+  *) # unknown option
+    echo "Unknown option: $key"
+    ;;
+  esac
+done
+
+# Check if Python VERSION variable is empty or unset
+if [ -z "$VERSION" ]; then
+  # Prompt user to enter the version of python to be installed
+  echo -n "Specify a version of python to be installed 3.7/3.9 [3.9]: "
+  # Read the input from user
+  read VERSION
+  # Set default value for VERSION if it's unset or empty
+  VERSION=${VERSION:-3.9}
+fi
 
-# Set the default users for each OS
-users_map["ubuntu"]="ubuntu"
-users_map["debian"]="admin"
-users_map["centos"]="centos"
-users_map["amzn"]="ec2-user"
+# Check if Gramex VERSION variable is empty or unset
+if [ -z "$GRAMEX_VERSION" ]; then
+  # Prompt user to enter the version of python to be installed
+  echo -n "Specify a version of python to be installed 3.7/3.9 [3.9]: "
+  # Read the input from user
+  read GRAMEX_VERSION
+  # Set default value for GRAMEX_VERSION if it's unset or empty
+  GRAMEX_VERSION=${GRAMEX_VERSION:-1.86.1}
+fi
 
-# TODO: Anaconda version should be a variable
-# TODO: Consider miniconda instead of Anaconda
-# Set the repo URL for the anaconda download
-repo_url="https://repo.anaconda.com/archive/Anaconda3-2022.10-Linux-x86_64.sh"
+# Set the default repo URL for the Miniconda download
+  repo_url="https://repo.anaconda.com/miniconda/Miniconda3-py39_22.11.1-1-Linux-x86_64.sh"
+
+# Check if the VERSION is 3.9
+if [ "$VERSION" = "3.7" ]; then
+  # Reassign the repo URL with the URL for version 3.7
+  repo_url="https://repo.anaconda.com/miniconda/Miniconda3-py37_22.11.1-1-Linux-x86_64.sh"
+fi
 
 # Check if the user is the root user
 if [ "$(id -u)" -ne 0 ]; then
@@ -29,21 +81,20 @@ else
   prefix=""
 fi
 
-
 # TODO: Set up distro-specific scripts for Debian, CentOS, Alpine, etc.
 # TODO: Based on the distro, call the relevant one
 # Set the package manager to use
-if command -v apt-get > /dev/null 2>&1; then
+if command -v apt-get >/dev/null 2>&1; then
   echo "The OS supports 'apt'."
   echo "Updating the pakcage indices."
   package_type=deb
   package_manager=apt
   $prefix apt update -qq -y
-elif command -v yum > /dev/null 2>&1; then
+elif command -v yum >/dev/null 2>&1; then
   echo "The OS supports 'yum'"
   package_type=rpm
   package_manager=yum
-elif command -v dnf > /dev/null 2>&1; then
+elif command -v dnf >/dev/null 2>&1; then
   echo "The OS supports 'dnf'"
   package_type=rpm
   package_manager=dnf
@@ -52,40 +103,37 @@ else
   exit 1
 fi
 
-# Read the ID field from /etc/os-release
-os_id=$(grep ^ID= /etc/os-release | awk -F= '{ print $2 }')
 
-# Remove the surrounding quotes from the ID string
-os_id="${os_id%\"}"
-os_id="${os_id#\"}"
 
+# Read the ID field from /etc/os-release
+os_id=$(grep ^ID= /etc/os-release | awk -F= '{ print $2 }' | tr -d '"')
 # Set the user variable to the default user for the current OS
-user=${users_map[$os_id]}
-echo "The Os detected is '${os_id}', hence the default user is '${user}'"
+eval "user=\$users_map_$os_id"
+echo "The Os detected is '$os_id', hence the default user is '$user'"
 
 # If curl is not installed, install it
-if ! command -v curl > /dev/null 2>&1; then
+if ! command -v curl >/dev/null 2>&1; then
   echo "$prefix $package_manager install -y curl"
   $prefix $package_manager install -y curl
 fi
-echo "Download anaconda installer\ncurl ${repo_url} -o /tmp/conda.sh"
+echo "Download miniconda installer\ncurl ${repo_url} -o /tmp/conda.sh"
 curl $repo_url -o /tmp/conda.sh
-
-# Run the Anaconda installer with the '-b' flag to run it in batch mode without prompts
-echo "Install Anaconda\nbash /tmp/conda.sh -b"
+# TODO: veryfy checksum of the downloaded file
+# Run the miniconda installer with the '-b' flag to run it in batch mode without prompts
+echo "Install miniconda\nbash /tmp/conda.sh -b"
 bash /tmp/conda.sh -b
 
-# Add Anaconda to the PATH
-echo "initiate anaconda \n/home/${user}/anaconda3/bin/conda init bash"
-/home/${user}/anaconda3/bin/conda init bash
+# Add miniconda to the PATH
+echo "initiate miniconda \n/home/${user}/miniconda3/bin/conda init bash"
+/home/${user}/miniconda3/bin/conda init bash
 echo "Setting environment variable for anaconda"
-# $prefix echo 'export PATH="/home/${user}/anaconda3/bin:$PATH"' >> /home/$user/.bashrc
-# $prefix echo ". /home/${user}/anaconda3/etc/profile.d/conda.sh" >> /home/$user/.bashrc
+# $prefix echo 'export PATH="/home/${user}/miniconda3/bin:$PATH"' >> /home/$user/.bashrc
+# $prefix echo ". /home/${user}/miniconda3/etc/profile.d/conda.sh" >> /home/$user/.bashrc
 # $prefix echo "conda activate base" >> /home/$user/.bashrc
 source /home/${user}/.bashrc
 # Activate the base environment
 echo "Activating conda environment in debian"
-source /home/$user/anaconda3/bin/activate base
+source /home/$user/miniconda3/bin/activate base
 
 echo "conda --version"
 conda --version
@@ -101,10 +149,7 @@ pip install --upgrade pip
 echo "$prefix rm -rf /tmp/conda.sh"
 $prefix rm -rf /tmp/conda.sh
 
-# TODO: Allow the user to specify version of Gramex
 # Install Gramex
-echo "GRAMEX_VERSION=\"1.86.1\" pip install gramex<=\"${GRAMEX_VERSION}\" gramexenterprise<=\"${GRAMEX_VERSION}\""
-GRAMEX_VERSION="1.86.1"
 pip install "gramex<=${GRAMEX_VERSION}" "gramexenterprise<=${GRAMEX_VERSION}"
 pip cache purge
 
@@ -130,10 +175,9 @@ echo "npm --version"
 npm --version
 
 # Allow `npm install -g` to work without sudo by installing to ~/.npm-packages
-mkdir -p ~/.npm-packages && \
-npm config set prefix "${HOME_DIR}/.npm-packages" && \
-
-gramex setup --all
+mkdir -p ~/.npm-packages &&
+  npm config set prefix "${HOME_DIR}/.npm-packages" &&
+  gramex setup --all
 
 # Clean up npm cache
 npm cache clean --force

From 19a4e7ba57731c6a2a9c3db13767e7b0580535e1 Mon Sep 17 00:00:00 2001
From: Shraddheya <shraddheya.shrivsatava@gmail.com>
Date: Thu, 12 Jan 2023 06:21:08 +0000
Subject: [PATCH 12/18] added automated testing for amazon linux 2

---
 pkg/testing.md                 | 27 ++-------------------------
 pkg/tests/amazon_linux_2.sh    | 22 ++++++++++++++++++++++
 pkg/tests/test_amazon_linux.sh |  7 +++++++
 3 files changed, 31 insertions(+), 25 deletions(-)
 create mode 100755 pkg/tests/amazon_linux_2.sh
 create mode 100755 pkg/tests/test_amazon_linux.sh

diff --git a/pkg/testing.md b/pkg/testing.md
index bf6dc55c..6b7b5721 100644
--- a/pkg/testing.md
+++ b/pkg/testing.md
@@ -68,32 +68,9 @@ Tesing the installer script in multiple platforms using docker containers
 
 ## amazonlinux 2:
 
-- Run docker Amazon linux container
-
-  ```sh
-  docker run --rm -itv $(pwd):/app -w /app amazonlinux:2 bash
-  ```
-
-- Create default user and activate that user in docker ubuntu shell
-
-  ```sh
-  # Install sudo
-  yum install -y sudo shadow-utils util-linux
-
-  # Create user
-  export user=ec2-user
-  useradd -m -p '' ${user}
-  usermod -aG wheel ${user}
-  echo "${user} ALL=(ALL) NOPASSWD: ALL" | tee /etc/sudoers.d/${user}
-  # Activate user
-  su - ${user}
-  ```
-
-- Test the installer script
-
   ```sh
-  chmod +x /app/pkg/setup.sh
-  /app/pkg/setup.sh
+  cd tests
+  ./test_amazon_linux_2.sh
   ```
 
 ## Alpine:
diff --git a/pkg/tests/amazon_linux_2.sh b/pkg/tests/amazon_linux_2.sh
new file mode 100755
index 00000000..64fb6a2f
--- /dev/null
+++ b/pkg/tests/amazon_linux_2.sh
@@ -0,0 +1,22 @@
+#!/bin/sh
+
+chmod +x /app/setup.sh
+# Install sudo
+yum install -y sudo shadow-utils util-linux
+
+# Create user
+export user=ec2-user
+useradd -m -p '' ${user}
+usermod -aG wheel ${user}
+echo "${user} ALL=(ALL) NOPASSWD: ALL" | tee /etc/sudoers.d/${user}
+
+# Run the command as the switched user
+su - ${user} -c "/app/setup.sh -d"
+
+su - ${user} -c "source ~/.bashrc"
+su - ${user} -c "conda --version"
+su - ${user} -c "python --version"
+su - ${user} -c "gramex --version"
+su - ${user} -c "node --version"
+# Exit the user session
+exit
diff --git a/pkg/tests/test_amazon_linux.sh b/pkg/tests/test_amazon_linux.sh
new file mode 100755
index 00000000..4c5cf12d
--- /dev/null
+++ b/pkg/tests/test_amazon_linux.sh
@@ -0,0 +1,7 @@
+#!/bin/bash
+
+docker run --rm -it \
+  -v $(pwd)/../setup.sh:/app/setup.sh \
+  -v $(pwd)/amazon_linux_2.sh:/test/amazon_linux_2.sh \
+  -w /test amazonlinux:2 \
+  sh /test/amazon_linux_2.sh

From 8b30c353a392e13324dc693c22a06d5e0c70b1d3 Mon Sep 17 00:00:00 2001
From: Shraddheya <shraddheya.shrivsatava@gmail.com>
Date: Thu, 12 Jan 2023 06:47:46 +0000
Subject: [PATCH 13/18] removed sh support as it is not working properly

---
 pkg/setup.sh | 8 ++++++--
 1 file changed, 6 insertions(+), 2 deletions(-)

diff --git a/pkg/setup.sh b/pkg/setup.sh
index 53c401a4..36736f8f 100755
--- a/pkg/setup.sh
+++ b/pkg/setup.sh
@@ -1,5 +1,5 @@
-#!/bin/sh
-
+#!/bin/bash
+# FIXME: The script still does nto work for sh
 if [ -z "$BASH_VERSION" ]; then
   echo "This script must be run in Bash. Exiting now."
   exit 1
@@ -126,6 +126,10 @@ bash /tmp/conda.sh -b
 # Add miniconda to the PATH
 echo "initiate miniconda \n/home/${user}/miniconda3/bin/conda init bash"
 /home/${user}/miniconda3/bin/conda init bash
+# if command -v bash >/dev/null 2>&1; then
+#   echo "Bash is installed."
+#   echo "initiate miniconda \n/home/${user}/miniconda3/bin/conda init bash"
+#   /home/${user}/miniconda3/bin/conda init bash
 echo "Setting environment variable for anaconda"
 # $prefix echo 'export PATH="/home/${user}/miniconda3/bin:$PATH"' >> /home/$user/.bashrc
 # $prefix echo ". /home/${user}/miniconda3/etc/profile.d/conda.sh" >> /home/$user/.bashrc

From 82c7998304a90bf9b4f701b16928dc8d5fcc1f4d Mon Sep 17 00:00:00 2001
From: Shraddheya <shraddheya.shrivsatava@gmail.com>
Date: Thu, 12 Jan 2023 06:48:06 +0000
Subject: [PATCH 14/18] restoring the amazon linux test to bash

---
 pkg/tests/test_amazon_linux.sh | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkg/tests/test_amazon_linux.sh b/pkg/tests/test_amazon_linux.sh
index 4c5cf12d..9eb434b2 100755
--- a/pkg/tests/test_amazon_linux.sh
+++ b/pkg/tests/test_amazon_linux.sh
@@ -4,4 +4,4 @@ docker run --rm -it \
   -v $(pwd)/../setup.sh:/app/setup.sh \
   -v $(pwd)/amazon_linux_2.sh:/test/amazon_linux_2.sh \
   -w /test amazonlinux:2 \
-  sh /test/amazon_linux_2.sh
+  bash /test/amazon_linux_2.sh

From 5a4ac0904c154b866b34170470a7e08ea8b4ae1b Mon Sep 17 00:00:00 2001
From: Shraddheya <shraddheya.shrivsatava@gmail.com>
Date: Thu, 12 Jan 2023 06:50:06 +0000
Subject: [PATCH 15/18] adding ubuntu automated test support

---
 pkg/testing.md           | 26 ++------------------------
 pkg/tests/test_ubuntu.sh |  7 +++++++
 pkg/tests/ubuntu.sh      | 18 ++++++++++++++++++
 3 files changed, 27 insertions(+), 24 deletions(-)
 create mode 100755 pkg/tests/test_ubuntu.sh
 create mode 100755 pkg/tests/ubuntu.sh

diff --git a/pkg/testing.md b/pkg/testing.md
index a1503e38..efdc293d 100644
--- a/pkg/testing.md
+++ b/pkg/testing.md
@@ -10,31 +10,9 @@ Tesing the installer script in multiple platforms using docker containers
 
 ## Ubuntu
 
-- Run docker ubuntu container
-
-  ```sh
-  docker run --rm -itv $(pwd):/app -w /app ubuntu:latest bash
-  ```
-
-- Create default user and activate that user in docker ubuntu shell
-
   ```sh
-  # Install sudo
-  apt update -y && apt install -y sudo
-  # Create user
-  export user=ubuntu
-  adduser --disabled-password --gecos "" ${user}
-  usermod -aG sudo ${user}
-  echo "${user} ALL=(ALL) NOPASSWD: ALL" | tee /etc/sudoers.d/${user}
-  # Activate user
-  su - ${user}
-  ```
-
-- Test the installer script
-
-  ```sh
-  chmod +x /app/pkg/setup.sh
-  /app/pkg/setup.sh
+  cd tests
+  ./test_ubuntu.sh
   ```
 
 ## Centos 7
diff --git a/pkg/tests/test_ubuntu.sh b/pkg/tests/test_ubuntu.sh
new file mode 100755
index 00000000..7bdf4428
--- /dev/null
+++ b/pkg/tests/test_ubuntu.sh
@@ -0,0 +1,7 @@
+#!/bin/bash
+
+docker run --rm -it \
+  -v $(pwd)/../setup.sh:/app/setup.sh \
+  -v $(pwd)/ubuntu.sh:/test/ubuntu.sh \
+  -w /test ubuntu:latest \
+  bash /test/ubuntu.sh
diff --git a/pkg/tests/ubuntu.sh b/pkg/tests/ubuntu.sh
new file mode 100755
index 00000000..43e484c4
--- /dev/null
+++ b/pkg/tests/ubuntu.sh
@@ -0,0 +1,18 @@
+#!/bin/sh
+
+cat /etc/os-release
+whoami
+
+chmod +x /app/setup.sh
+# install sudo
+apt update -y && apt install -y sudo
+
+# Create user
+export user=ubuntu
+adduser --disabled-password --gecos "" ${user}
+usermod -aG sudo ${user}
+echo "${user} ALL=(ALL) NOPASSWD: ALL" | tee /etc/sudoers.d/${user}
+# Run the command as the switched user
+su - ${user} -c "/app/setup.sh -d"
+# Exit the user session
+exit

From ccfef4e6b09f3ca1545f09f23641c3ed7bd24b3f Mon Sep 17 00:00:00 2001
From: Shraddheya <shraddheya.shrivsatava@gmail.com>
Date: Thu, 12 Jan 2023 06:51:34 +0000
Subject: [PATCH 16/18] renaming for better readability

---
 pkg/tests/{test_amazon_linux.sh => test_amazon_linux_2.sh} | 0
 1 file changed, 0 insertions(+), 0 deletions(-)
 rename pkg/tests/{test_amazon_linux.sh => test_amazon_linux_2.sh} (100%)

diff --git a/pkg/tests/test_amazon_linux.sh b/pkg/tests/test_amazon_linux_2.sh
similarity index 100%
rename from pkg/tests/test_amazon_linux.sh
rename to pkg/tests/test_amazon_linux_2.sh

From b2a7b3f40a6db9b5a6b8c32281bde6d0aaceb446 Mon Sep 17 00:00:00 2001
From: Shraddheya <shraddheya.shrivsatava@gmail.com>
Date: Thu, 12 Jan 2023 06:56:51 +0000
Subject: [PATCH 17/18] adding centos7 automated test

---
 pkg/testing.md            | 26 ++------------------------
 pkg/tests/centos7.sh      | 22 ++++++++++++++++++++++
 pkg/tests/test_centos7.sh |  7 +++++++
 3 files changed, 31 insertions(+), 24 deletions(-)
 create mode 100755 pkg/tests/centos7.sh
 create mode 100755 pkg/tests/test_centos7.sh

diff --git a/pkg/testing.md b/pkg/testing.md
index efdc293d..bbfe33af 100644
--- a/pkg/testing.md
+++ b/pkg/testing.md
@@ -17,31 +17,9 @@ Tesing the installer script in multiple platforms using docker containers
 
 ## Centos 7
 
-- Run docker Centos container
-
-  ```sh
-  docker run --rm -itv $(pwd):/app -w /app centos:7 bash
-  ```
-
-- Create default user and activate that user in docker ubuntu shell
-
   ```sh
-  # Install sudo
-  yum install -y sudo
-  # Create user
-  export user=centos
-  useradd -m -p '' ${user}
-  usermod -aG wheel ${user}
-  echo "${user} ALL=(ALL) NOPASSWD: ALL" | tee /etc/sudoers.d/${user}
-  # Activate user
-  su - ${user}
-  ```
-
-- Test the installer script
-
-  ```sh
-  chmod +x /app/pkg/setup.sh
-  /app/pkg/setup.sh
+  cd tests
+  ./test_centos7.sh
   ```
 
 ## amazonlinux 2
diff --git a/pkg/tests/centos7.sh b/pkg/tests/centos7.sh
new file mode 100755
index 00000000..be60b48f
--- /dev/null
+++ b/pkg/tests/centos7.sh
@@ -0,0 +1,22 @@
+#!/bin/sh
+
+chmod +x /app/setup.sh
+# Install sudo
+yum install -y sudo
+
+# Create user
+export user=centos
+useradd -m -p '' ${user}
+usermod -aG wheel ${user}
+echo "${user} ALL=(ALL) NOPASSWD: ALL" | tee /etc/sudoers.d/${user}
+
+# Run the command as the switched user
+su - ${user} -c "/app/setup.sh -d"
+
+su - ${user} -c "source ~/.bashrc"
+su - ${user} -c "conda --version"
+su - ${user} -c "python --version"
+su - ${user} -c "gramex --version"
+su - ${user} -c "node --version"
+# Exit the user session
+exit
diff --git a/pkg/tests/test_centos7.sh b/pkg/tests/test_centos7.sh
new file mode 100755
index 00000000..1927bb6f
--- /dev/null
+++ b/pkg/tests/test_centos7.sh
@@ -0,0 +1,7 @@
+#!/bin/bash
+
+docker run --rm -it \
+  -v $(pwd)/../setup.sh:/app/setup.sh \
+  -v $(pwd)/centos7.sh:/test/centos7.sh \
+  -w /test centos:7 \
+  bash /test/centos7.sh

From b620f7a2632ef007786ca777c99f71f1dc9c6f52 Mon Sep 17 00:00:00 2001
From: Shraddheya <shraddheya.shrivsatava@gmail.com>
Date: Thu, 12 Jan 2023 06:58:14 +0000
Subject: [PATCH 18/18] currecting bash shell to use for tests

---
 pkg/tests/amazon_linux_2.sh | 2 +-
 pkg/tests/centos7.sh        | 2 +-
 pkg/tests/ubuntu.sh         | 2 +-
 3 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkg/tests/amazon_linux_2.sh b/pkg/tests/amazon_linux_2.sh
index 64fb6a2f..57d73652 100755
--- a/pkg/tests/amazon_linux_2.sh
+++ b/pkg/tests/amazon_linux_2.sh
@@ -1,4 +1,4 @@
-#!/bin/sh
+#!/bin/bash
 
 chmod +x /app/setup.sh
 # Install sudo
diff --git a/pkg/tests/centos7.sh b/pkg/tests/centos7.sh
index be60b48f..f4197543 100755
--- a/pkg/tests/centos7.sh
+++ b/pkg/tests/centos7.sh
@@ -1,4 +1,4 @@
-#!/bin/sh
+#!/bin/bash
 
 chmod +x /app/setup.sh
 # Install sudo
diff --git a/pkg/tests/ubuntu.sh b/pkg/tests/ubuntu.sh
index 43e484c4..ee08423a 100755
--- a/pkg/tests/ubuntu.sh
+++ b/pkg/tests/ubuntu.sh
@@ -1,4 +1,4 @@
-#!/bin/sh
+#!/bin/bash
 
 cat /etc/os-release
 whoami