diff --git a/tools/deprecated-config-checker/checker/checker_test.go b/tools/deprecated-config-checker/checker/checker_test.go
index 9d93bc84b62a..e02315821d4b 100644
--- a/tools/deprecated-config-checker/checker/checker_test.go
+++ b/tools/deprecated-config-checker/checker/checker_test.go
@@ -27,6 +27,12 @@ var (
 		"storage_config.aws.sse_encryption",
 		"storage_config.s3.sse_encryption",
 		"chunk_store_config.max_look_back_period",
+		"storage_config.boltdb_shipper.shared_store",
+		"storage_config.boltdb_shipper.shared_store_key_prefix",
+		"storage_config.tsdb_shipper.shared_store",
+		"storage_config.tsdb_shipper.shared_store_key_prefix",
+		"compactor.shared_store",
+		"compactor.shared_store_key_prefix",
 	}
 
 	expectedConfigDeprecates = []string{
diff --git a/tools/deprecated-config-checker/deleted-config.yaml b/tools/deprecated-config-checker/deleted-config.yaml
index b21bc995185d..322e861d70ee 100644
--- a/tools/deprecated-config-checker/deleted-config.yaml
+++ b/tools/deprecated-config-checker/deleted-config.yaml
@@ -28,9 +28,18 @@ ruler:
 
 storage_config:
   boltdb_shipper:
+    shared_store: "object_store setting in the period_config will be used to configure the store for the index."
+    shared_store_key_prefix: "Path prefix for storing the index can now be configured by setting path_prefix under index key in period_config."
     use_boltdb_shipper_as_backup: "Since TSDB is now stable and the recommended index type, the setting has become irrelevant and therefore was removed. The previous default value false is applied."
+  tsdb_shipper:
+    shared_store: "object_store setting in the period_config will be used to configure the store for the index."
+    shared_store_key_prefix: "Path prefix for storing the index can now be configured by setting path_prefix under index key in period_config."
   aws: *s3_deletes
   s3: *s3_deletes
 
+compactor:
+  shared_store: "Compactor will now operate on all the object stores configured in period config where the index type is either tsdb or boltdb-shipper. -compactor.delete-request-store to configure the store for delete requests is now a required field."
+  shared_store_key_prefix: "Use -compactor.delete-request-store.key-prefix to configure the path prefix under which the delete requests are stored."
+
 chunk_store_config:
   max_look_back_period: "Use global or per-tenant max_query_lookback configuration from limits_config."
diff --git a/tools/deprecated-config-checker/test-fixtures/config.yaml b/tools/deprecated-config-checker/test-fixtures/config.yaml
index 2600c63034ea..80d864188b0f 100644
--- a/tools/deprecated-config-checker/test-fixtures/config.yaml
+++ b/tools/deprecated-config-checker/test-fixtures/config.yaml
@@ -41,6 +41,8 @@ index_gateway:
 
 compactor:
   working_directory: /tmp/loki/boltdb-shipper-active
+  shared_store: gcs # DELETED
+  shared_store_key_prefix: /index # DELETED
   deletion_mode: "delete" # DEPRECATED
 
 chunk_store_config:
@@ -68,8 +70,13 @@ storage_config:
   grpc_store: # DEPRECATED
     server_address: "grpc.123abc.net"
   boltdb_shipper:
+    shared_store: gcs # DELETED
+    shared_store_key_prefix: /index # DELETED
     active_index_directory: /tmp/loki/boltdb-shipper-active
     use_boltdb_shipper_as_backup: true # DELETED
+  tsdb_shipper:
+    shared_store: gcs # DELETED
+    shared_store_key_prefix: /index # DELETED
   aws:
     s3: "bucket.123abc.net"
     sse_encryption: true # DELETED