how2.md

Get Docker!

This is going to allow us to all be working off the same slides and operating systems. https://docs.docker.com/docker-for-mac/

Get VNC viewer

https://www.realvnc.com/en/connect/download/viewer/

Pull my docker image!

docker pull gshearrer/fmribootcamp:0.05

This is gonna take a minute. While you are waiting brush up on linux! http://www.ee.surrey.ac.uk/Teaching/Unix/

#Open a terminal and type the following open -a XQuartz IP=$(ifconfig en1 | grep inet | awk '$1=="inet" {print $2}') xhost + $IP

Test the docker

docker run --rm -it -p 5901:5901 gshearrer/fmribootcamp:0.05 xterm

You should now have a vnc running

Open your vnc viewer and type 127.0.0.1:5901 It will ask you for a password: graceiscool You should have a plain grey desktop. If you click the desktop a terminal window will appear. Test the install by typing the following the in VNC terminal (not your local terminal)

fsl &

You should now have the fsl GUI on the desktop. If that is working you are all good! If not..... contact me. If that is all good (or if it isn't but you want to stop) type exit in the vnc terminal

Feeling advanced you can play with this and test the jupyter notebooks

Note you need to change the path to your machine

docker run --rm -it -p 8888:8888 -p 5901:5901 -v /Users/gracer/Google\ Drive/fMRI_workshop/2019/4dock/notebooks/:/home/jovyan/work gshearrer/fmribootcamp:0.05 xterm

docker ps -a

docker exec -it a995c3ff00ca bash

jupyter notebook --allow-root