ReadPhilips Validate() Failed upon Node Creation on Mac OS X 10.11

[ramueller11]

I'm a new user to GPI and I'd like to report an issue running the readPhilips node in GPI Lab under MacOS X.

The node is created in the GUI and the properties page works fine. It doesn't look like the node is operable on Mac OS X. However, the console returns the following message:

$ /Applications/GPI.app/Contents/Resources/miniconda/bin/gpi.command ; exit;
 GPI 1.0.0 (2015-11-13)  Copyright (C) 2014 Dignity Health
 This program comes with ABSOLUTELY NO WARRANTY; see the LICENSE for details.

NO CLINICAL USE.  THE SOFTWARE IS NOT INTENDED FOR COMMERCIAL PURPOSES
AND SHOULD BE USED ONLY FOR NON-COMMERCIAL RESEARCH PURPOSES.  THE SOFTWARE
MAY NOT IN ANY EVENT BE USED FOR ANY CLINICAL OR DIAGNOSTIC PURPOSES.  YOU
ACKNOWLEDGE AND AGREE THAT THE SOFTWARE IS NOT INTENDED FOR USE IN ANY HIGH
RISK OR STRICT LIABILITY ACTIVITY, INCLUDING BUT NOT LIMITED TO LIFE SUPPORT
OR EMERGENCY MEDICAL OPERATIONS OR USES.  LICENSOR MAKES NO WARRANTY AND HAS
NOR LIABILITY ARISING FROM ANY USE OF THE SOFTWARE IN ANY HIGH RISK OR STRICT
LIABILITY ACTIVITIES.

matplotlib version:  1.4.3
Fri Nov  9 18:12:11 2018 - gpi.node:604 - ERROR - ReadPhilips: validate() failed.

Furthermore, the bottom of the properties window shows the following message:

  Validate Error (v_error) [Process]

I have tried both the MacOS X DMG distribution (running with Python 3.5) and the shell installation with the latest version of GPILab (Python 3.6) and it has produced the same issue.

I'm running Mac OS X 10.11.4 on a MacBook Pro ( Core i7, 16 GB RAM ).

I can provide the .gdirc configuration file but it also occurs with and without a configuration file
defined.

With many thanks,
Rob Mueller

[aganders3]

Hi Rob, thanks for submitting the bug report.

Does the validation error occur before or after you have selected a file to read?

[aganders3]

Also can you please provide some more debug information?

Please run conda list in your GPI environment and provide the output here. If you are using the "App" version you will need to navigate into /Applications/GPI.app/Contents/Resources/miniconda/bin via terminal to run this command.

[ramueller11]

So sorry for my delayed response.
The validation error occurs upon initiation of the node - the occurrence of the validation error does not seem to correspond with the selection of the file.

The results of conda list is as follows:

# packages in environment at /Applications/GPI.app/Contents/Resources/miniconda:
#
astyle                    2.05.1                        0  
conda                     3.18.5                   py35_0  
conda-env                 2.4.4                    py35_0  
eigen                     3.2.5                         0  
fftw                      3.3.4                         0  
freetype                  2.5.5                         0  
gpi                       1.0.0                 py35_0_rc  
gpi-core-nodes            1.0.0                 py35_0_rc  
gpi-docs                  1.0.0                 py35_0_rc  
h5py                      2.5.0                np19py35_3  
hdf5                      1.8.15.1                      2  
libpng                    1.6.17                        0  
matplotlib                1.4.3                np19py35_3  
numpy                     1.9.3                    py35_0  
openssl                   1.0.2d                        0  
pep8                      1.6.2                    py35_0  
pip                       7.1.2                    py35_0  
psutil                    3.2.2                    py35_0  
pycosat                   0.6.1                    py35_0  
pycrypto                  2.6.1                    py35_0  
pyflakes                  1.0.0                    py35_0  
pyopengl                  3.1.1a1              np19py35_0  
pyparsing                 2.0.3                    py35_0  
pyqt                      4.11.4                   py35_0  
python                    3.5.0                         1  
python-dateutil           2.4.2                    py35_0  
pytz                      2015.7                   py35_0  
pyyaml                    3.11                     py35_1  
qimage2ndarray            1.5                        py35  
qt                        4.8.7                         1  
readline                  6.2                           2  
requests                  2.8.1                    py35_0  
scipy                     0.16.0               np19py35_1  
setuptools                18.4                     py35_0  
sip                       4.16.9                   py35_0  
six                       1.10.0                   py35_0  
sqlite                    3.8.4.1                       1  
tk                        8.5.18                        0  
wheel                     0.26.0                   py35_1  
xz                        5.0.5                         0  
yaml                      0.1.6                         0  
zlib                      1.2.8                         0