the output gtf file coordinates is different from output fasta

[litun-fkby]

Hi , i ues the gffread to extracting transcript sequences and get the new gtf ,and the coordinates in gft in gtf is different from fasta，because the chromosome name is different , and the coordinates in gft not convert the value relative to the new transcript fasta, and some info in raw gtf missing such as exon_number , exon_id .
the output fasta like:

the output gtf like:

Is there some option to get new gtf which have the corresponding chromosome name and coordinates relative to the output fasta?