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First MSA sequence is not the {query_sequence=}' #132

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James-lin9 opened this issue Nov 27, 2024 · 0 comments
Open

First MSA sequence is not the {query_sequence=}' #132

James-lin9 opened this issue Nov 27, 2024 · 0 comments
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@James-lin9
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James-lin9 commented Nov 27, 2024

Hi, I ran default MSA search by jackhammer for P26341 (uniprot ID) and then when I did the inference, I got an error: 'First MSA sequence is not the {query_sequence=}'. How do I fix this? Shall I rerun the jackhammer?
I check the run_alphafold.py this could be caused by mutation from jackhammer?
"# Check if the 1st MSA sequence matches the query sequence. Since it may be mutated by the search tool (jackhmmer) check using the featurized version."

@Augustin-Zidek Augustin-Zidek added the bug Something isn't working label Nov 27, 2024
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