We read every piece of feedback, and take your input very seriously.
To see all available qualifiers, see our documentation.
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
run: python run_docker.py --fasta_paths=$af2_fasta_dir/P09601.fasta --max_template_date=2021-11-01 --db_preset=full_dbs --model_preset=monomer --data_dir=$af2_database --output_dir=$af2_output_dir
error: (af2) tom@tom-7920-tower:/media/tom/ex8/af2/alphafold2.3.2/docker$ ./run_af2.sh I0116 11:49:15.439172 140612487418112 run_docker.py:116] Mounting /media/tom/ex8/af2/fasta_input -> /mnt/fasta_path_0 I0116 11:49:15.439306 140612487418112 run_docker.py:116] Mounting /media/tom/ex8/af2/af2_database/uniref90 -> /mnt/uniref90_database_path I0116 11:49:15.439398 140612487418112 run_docker.py:116] Mounting /media/tom/ex8/af2/af2_database/mgnify -> /mnt/mgnify_database_path I0116 11:49:15.439456 140612487418112 run_docker.py:116] Mounting /media/tom/ex8/af2/af2_database -> /mnt/data_dir I0116 11:49:15.439520 140612487418112 run_docker.py:116] Mounting /media/tom/ex8/af2/af2_database/pdb_mmcif -> /mnt/template_mmcif_dir I0116 11:49:15.439583 140612487418112 run_docker.py:116] Mounting /media/tom/ex8/af2/af2_database/pdb_mmcif -> /mnt/obsolete_pdbs_path I0116 11:49:15.439637 140612487418112 run_docker.py:116] Mounting /media/tom/ex8/af2/af2_database/pdb70/pdb70 -> /mnt/pdb70_database_path I0116 11:49:15.439696 140612487418112 run_docker.py:116] Mounting /media/tom/ex8/af2/af2_database/uniref30 -> /mnt/uniref30_database_path I0116 11:49:15.439757 140612487418112 run_docker.py:116] Mounting /media/tom/ex8/af2/af2_database/bfd -> /mnt/bfd_database_path I0116 11:49:18.096810 140612487418112 run_docker.py:258] FATAL Flags parsing error: Unknown command line flag 'models_to_relax'. Did you mean: model_preset ? I0116 11:49:18.097167 140612487418112 run_docker.py:258] Pass --helpshort or --helpfull to see help on flags.
sos!!
The text was updated successfully, but these errors were encountered:
No branches or pull requests
run:
python run_docker.py
--fasta_paths=$af2_fasta_dir/P09601.fasta
--max_template_date=2021-11-01
--db_preset=full_dbs
--model_preset=monomer
--data_dir=$af2_database
--output_dir=$af2_output_dir
error:
(af2) tom@tom-7920-tower:/media/tom/ex8/af2/alphafold2.3.2/docker$ ./run_af2.sh
I0116 11:49:15.439172 140612487418112 run_docker.py:116] Mounting /media/tom/ex8/af2/fasta_input -> /mnt/fasta_path_0
I0116 11:49:15.439306 140612487418112 run_docker.py:116] Mounting /media/tom/ex8/af2/af2_database/uniref90 -> /mnt/uniref90_database_path
I0116 11:49:15.439398 140612487418112 run_docker.py:116] Mounting /media/tom/ex8/af2/af2_database/mgnify -> /mnt/mgnify_database_path
I0116 11:49:15.439456 140612487418112 run_docker.py:116] Mounting /media/tom/ex8/af2/af2_database -> /mnt/data_dir
I0116 11:49:15.439520 140612487418112 run_docker.py:116] Mounting /media/tom/ex8/af2/af2_database/pdb_mmcif -> /mnt/template_mmcif_dir
I0116 11:49:15.439583 140612487418112 run_docker.py:116] Mounting /media/tom/ex8/af2/af2_database/pdb_mmcif -> /mnt/obsolete_pdbs_path
I0116 11:49:15.439637 140612487418112 run_docker.py:116] Mounting /media/tom/ex8/af2/af2_database/pdb70/pdb70 -> /mnt/pdb70_database_path
I0116 11:49:15.439696 140612487418112 run_docker.py:116] Mounting /media/tom/ex8/af2/af2_database/uniref30 -> /mnt/uniref30_database_path
I0116 11:49:15.439757 140612487418112 run_docker.py:116] Mounting /media/tom/ex8/af2/af2_database/bfd -> /mnt/bfd_database_path
I0116 11:49:18.096810 140612487418112 run_docker.py:258] FATAL Flags parsing error: Unknown command line flag 'models_to_relax'. Did you mean: model_preset ?
I0116 11:49:18.097167 140612487418112 run_docker.py:258] Pass --helpshort or --helpfull to see help on flags.
sos!!
The text was updated successfully, but these errors were encountered: