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Initial report and test data is on a private thread, which this is mentioned on.
Test steps (on Windows, with 1.0.3):
open NGFF-Converter
set Convert to to OME-TIFF
leave Extra Arguments empty
add test input file, leave output file as default
click Run Conversions
conversion should finish almost instantly
add --extra-readers to Extra Arguments box
add test input file again, set output file to some other name so both OME-TIFF files are kept
click Run Conversions
conversion will again finish almost instantly
close and reopen NGFF-Converter
set Convert to to OME-TIFF
add --extra-readers to Extra Arguments box
add test input file, set output file to a third unique name (so all 3 OME-TIFF files are kept)
click Run Conversions
conversion should take much longer
inspecting the in-progress .zarr or OME-TIFF after the fact should show lots of data, where the OME-TIFFs from the first 2 steps are very small
Logs suggest that the --extra-readers flag is passed to bioformats2raw in step 9 (as expected), but for some reason it's not being respected. I kind of suspect glencoesoftware/bioformats2raw#145 might be the root cause here, but don't have concrete proof. Bumping to bioformats2raw 0.5.0 would be the first thing to test.
The text was updated successfully, but these errors were encountered:
Initial report and test data is on a private thread, which this is mentioned on.
Test steps (on Windows, with 1.0.3):
Convert to
toOME-TIFF
Extra Arguments
emptyRun Conversions
--extra-readers
toExtra Arguments
boxRun Conversions
Convert to
toOME-TIFF
--extra-readers
toExtra Arguments
boxRun Conversions
Logs suggest that the
--extra-readers
flag is passed tobioformats2raw
in step 9 (as expected), but for some reason it's not being respected. I kind of suspect glencoesoftware/bioformats2raw#145 might be the root cause here, but don't have concrete proof. Bumping to bioformats2raw 0.5.0 would be the first thing to test.The text was updated successfully, but these errors were encountered: