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Error in file(file, "rt") : invalid 'description' argument #18

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yangxue244 opened this issue Jul 26, 2023 · 1 comment
Open

Error in file(file, "rt") : invalid 'description' argument #18

yangxue244 opened this issue Jul 26, 2023 · 1 comment

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@yangxue244
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yangxue244 commented Jul 26, 2023

Can you help me with this error? please

The code is:

` ProcessedData <- AMARETTO_Preprocess(DataSetDirectories,BatchData)

Loading mRNA data.
Missing value estimation.
Removing 4480 genes with more than 10% missing values.
Removing 0 patients with more than 10% missing values.
Cluster size 16021 broken into 10347 5674
Cluster size 10347 broken into 3930 6417
Cluster size 3930 broken into 1029 2901
Done cluster 1029
Cluster size 2901 broken into 1932 969
Cluster size 1932 broken into 856 1076
Done cluster 856
Done cluster 1076
Done cluster 1932
Done cluster 969
Done cluster 2901
Done cluster 3930
Cluster size 6417 broken into 2955 3462
Cluster size 2955 broken into 1662 1293
Cluster size 1662 broken into 1024 638
Done cluster 1024
Done cluster 638
Done cluster 1662
Done cluster 1293
Done cluster 2955
Cluster size 3462 broken into 1685 1777
Cluster size 1685 broken into 874 811
Done cluster 874
Done cluster 811
Done cluster 1685
Cluster size 1777 broken into 809 968
Done cluster 809
Done cluster 968
Done cluster 1777
Done cluster 3462
Done cluster 6417
Done cluster 10347
Cluster size 5674 broken into 3221 2453
Cluster size 3221 broken into 1431 1790
Done cluster 1431
Cluster size 1790 broken into 762 1028
Done cluster 762
Done cluster 1028
Done cluster 1790
Done cluster 3221
Cluster size 2453 broken into 1426 1027
Done cluster 1426
Done cluster 1027
Done cluster 2453
Done cluster 5674
Batch correction.
Reading Sample Information File
Reading Expression Data File
Found 37 batches
Found 0 covariate(s)
Standardizing Data across genes
Fitting L/S model and finding priors
Finding parametric adjustments
Adjusting the Data
Processing gene ids and merging.
Loading CNV data.
Processing GISTIC output.
Error in file(file, "rt") : invalid 'description' argument`

@yangxue244
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I apologize for my stupidity. Just change the file path.┑( ̄Д  ̄)┍

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