We read every piece of feedback, and take your input very seriously.
To see all available qualifiers, see our documentation.
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Can you help me with this error? please
The code is:
` ProcessedData <- AMARETTO_Preprocess(DataSetDirectories,BatchData)
Loading mRNA data. Missing value estimation. Removing 4480 genes with more than 10% missing values. Removing 0 patients with more than 10% missing values. Cluster size 16021 broken into 10347 5674 Cluster size 10347 broken into 3930 6417 Cluster size 3930 broken into 1029 2901 Done cluster 1029 Cluster size 2901 broken into 1932 969 Cluster size 1932 broken into 856 1076 Done cluster 856 Done cluster 1076 Done cluster 1932 Done cluster 969 Done cluster 2901 Done cluster 3930 Cluster size 6417 broken into 2955 3462 Cluster size 2955 broken into 1662 1293 Cluster size 1662 broken into 1024 638 Done cluster 1024 Done cluster 638 Done cluster 1662 Done cluster 1293 Done cluster 2955 Cluster size 3462 broken into 1685 1777 Cluster size 1685 broken into 874 811 Done cluster 874 Done cluster 811 Done cluster 1685 Cluster size 1777 broken into 809 968 Done cluster 809 Done cluster 968 Done cluster 1777 Done cluster 3462 Done cluster 6417 Done cluster 10347 Cluster size 5674 broken into 3221 2453 Cluster size 3221 broken into 1431 1790 Done cluster 1431 Cluster size 1790 broken into 762 1028 Done cluster 762 Done cluster 1028 Done cluster 1790 Done cluster 3221 Cluster size 2453 broken into 1426 1027 Done cluster 1426 Done cluster 1027 Done cluster 2453 Done cluster 5674 Batch correction. Reading Sample Information File Reading Expression Data File Found 37 batches Found 0 covariate(s) Standardizing Data across genes Fitting L/S model and finding priors Finding parametric adjustments Adjusting the Data Processing gene ids and merging. Loading CNV data. Processing GISTIC output. Error in file(file, "rt") : invalid 'description' argument`
The text was updated successfully, but these errors were encountered:
I apologize for my stupidity. Just change the file path.┑( ̄Д  ̄)┍
Sorry, something went wrong.
No branches or pull requests
Can you help me with this error? please
The code is:
` ProcessedData <- AMARETTO_Preprocess(DataSetDirectories,BatchData)
Loading mRNA data.
Missing value estimation.
Removing 4480 genes with more than 10% missing values.
Removing 0 patients with more than 10% missing values.
Cluster size 16021 broken into 10347 5674
Cluster size 10347 broken into 3930 6417
Cluster size 3930 broken into 1029 2901
Done cluster 1029
Cluster size 2901 broken into 1932 969
Cluster size 1932 broken into 856 1076
Done cluster 856
Done cluster 1076
Done cluster 1932
Done cluster 969
Done cluster 2901
Done cluster 3930
Cluster size 6417 broken into 2955 3462
Cluster size 2955 broken into 1662 1293
Cluster size 1662 broken into 1024 638
Done cluster 1024
Done cluster 638
Done cluster 1662
Done cluster 1293
Done cluster 2955
Cluster size 3462 broken into 1685 1777
Cluster size 1685 broken into 874 811
Done cluster 874
Done cluster 811
Done cluster 1685
Cluster size 1777 broken into 809 968
Done cluster 809
Done cluster 968
Done cluster 1777
Done cluster 3462
Done cluster 6417
Done cluster 10347
Cluster size 5674 broken into 3221 2453
Cluster size 3221 broken into 1431 1790
Done cluster 1431
Cluster size 1790 broken into 762 1028
Done cluster 762
Done cluster 1028
Done cluster 1790
Done cluster 3221
Cluster size 2453 broken into 1426 1027
Done cluster 1426
Done cluster 1027
Done cluster 2453
Done cluster 5674
Batch correction.
Reading Sample Information File
Reading Expression Data File
Found 37 batches
Found 0 covariate(s)
Standardizing Data across genes
Fitting L/S model and finding priors
Finding parametric adjustments
Adjusting the Data
Processing gene ids and merging.
Loading CNV data.
Processing GISTIC output.
Error in file(file, "rt") : invalid 'description' argument`
The text was updated successfully, but these errors were encountered: