diff --git a/ngs/HiCTools.py b/ngs/HiCTools.py index c456f59..04d3552 100644 --- a/ngs/HiCTools.py +++ b/ngs/HiCTools.py @@ -564,9 +564,7 @@ def extract_windows_different_sizes_iccf(regions, arms, cooler_file, processes=2 arms -> chromosomal arms """ # assign arms to regions - snipping_windows = _assign_supports( - regions, bioframe.parse_regions(arms) - ).dropna() + snipping_windows = _assign_supports(regions, bioframe.parse_regions(arms)).dropna() iccf_snipper = cooltools.snipping.CoolerSnipper( cooler_file, regions=bioframe.parse_regions(arms) ) @@ -586,9 +584,7 @@ def extract_windows_different_sizes_obs_exp( arms -> chromosomal arms """ # assign arms to regions - snipping_windows = _assign_supports( - regions, bioframe.parse_regions(arms) - ).dropna() + snipping_windows = _assign_supports(regions, bioframe.parse_regions(arms)).dropna() oe_snipper = cooltools.snipping.ObsExpSnipper( cooler_file, expected_df, regions=bioframe.parse_regions(arms) )