-- The Fortran compiler identification is GNU 13.1.0 -- The CXX compiler identification is GNU 13.1.0 -- The C compiler identification is GNU 13.1.0 -- Check for working Fortran compiler: /data/home/liumy/tools/gcc13/gcc/bin/gfortran -- Check for working Fortran compiler: /data/home/liumy/tools/gcc13/gcc/bin/gfortran -- works -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Checking whether /data/home/liumy/tools/gcc13/gcc/bin/gfortran supports Fortran 90 -- Checking whether /data/home/liumy/tools/gcc13/gcc/bin/gfortran supports Fortran 90 -- yes -- Check for working CXX compiler: /data/home/liumy/tools/gcc13/gcc/bin/g++ -- Check for working CXX compiler: /data/home/liumy/tools/gcc13/gcc/bin/g++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Check for working C compiler: /data/home/liumy/tools/gcc13/gcc/bin/gcc -- Check for working C compiler: /data/home/liumy/tools/gcc13/gcc/bin/gcc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Found NetCDF: /data/home/liumy/tools/geos-chem-lib/lib/libnetcdff.so -- Found ESMF: /data/home/liumy/tools/ESMF_8_4_2/INSTALL_gfortran13.1_openmpi4.1/include (found version "8.4.2") -- Found MPI_C: /data/home/liumy/tools/openmpi-4.1.5/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /data/home/liumy/tools/openmpi-4.1.5/lib/libmpi.so (found version "3.1") -- Found MPI_Fortran: /data/home/liumy/tools/openmpi-4.1.5/lib/libmpi_usempif08.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Found Git: /usr/bin/git (found version "1.8.3.1") -- Performing Test C_FLAG_TEST_1 -- Performing Test C_FLAG_TEST_1 - Success -- Performing Test CXX_FLAG_TEST_1 -- Performing Test CXX_FLAG_TEST_1 - Success -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of void* -- Check size of void* - done -- Check if the system is big endian -- Searching 16 bit integer -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- Check size of off_t -- Check size of off_t - done -- Performing Test FORTRAN_COMPILER_SUPPORTS_ASSUMED_TYPE -- Performing Test FORTRAN_COMPILER_SUPPORTS_ASSUMED_TYPE: SUCCESS -- Performing Test FORTRAN_COMPILER_SUPPORTS_FINDLOC -- Performing Test FORTRAN_COMPILER_SUPPORTS_FINDLOC: SUCCESS -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP_Fortran: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Check if compiler accepts -pthread -- Check if compiler accepts -pthread - yes -- Found Threads: TRUE -- Could NOT find MKL (missing: MKL_LIBRARIES MKL_INCLUDE_DIRS) -- Looking for Fortran sgemm -- Looking for Fortran sgemm - not found -- Could NOT find BLAS (missing: BLAS_LIBRARIES) -- LAPACK requires BLAS -- A library with LAPACK API not found. Please specify library location. -- Could NOT find BLAS (missing: BLAS_LIBRARIES) -- Could NOT find ImageMagick (missing: ImageMagick_mogrify_EXECUTABLE) -- NOTE: ImageMagick was not found. This will prevent using LaTeX and some postprocessing utilities from running, but does not affect the build -- Could NOT find LATEX (missing: LATEX_COMPILER) -- Found MPI: TRUE (found version "3.1") found components: C CXX Fortran -- Performing Test _LOGICAL_DEFAULT_KIND: SUCCESS (value=4) -- Performing Test _INT_DEFAULT_KIND: SUCCESS (value=4) -- Performing Test _ISO_INT8: SUCCESS (value=1) -- Performing Test _ISO_INT16: SUCCESS (value=2) -- Performing Test _ISO_INT32: SUCCESS (value=4) -- Performing Test _ISO_INT64: SUCCESS (value=8) -- Performing Test _REAL_DEFAULT_KIND: SUCCESS (value=4) -- Performing Test _DOUBLE_DEFAULT_KIND: SUCCESS (value=8) -- Performing Test _ISO_REAL32: SUCCESS (value=4) -- Performing Test _ISO_REAL64: SUCCESS (value=8) -- Performing Test _ISO_REAL128: SUCCESS (value=16) -- Using submodule /data/home/liumy/GCHP/src/GCHP/src/gFTL-shared/extern/gFTL -- cpp is /data/home/liumy/tools/gcc13/gcc/bin/cpp -- /data/home/liumy/GCHP/src/GCHP/src/yaFyaml -- Performing Test SUPPORT_FOR_ASSUMED_TYPE -- Performing Test SUPPORT_FOR_ASSUMED_TYPE: FAILURE -- Performing Test SUPPORT_FOR_C_LOC_ASSUMED_SIZE -- Performing Test SUPPORT_FOR_C_LOC_ASSUMED_SIZE: FAILURE -- Performing Test SUPPORT_FOR_MPI_ALLOC_MEM_CPTR -- Performing Test SUPPORT_FOR_MPI_ALLOC_MEM_CPTR: FAILURE -- Found Doxygen: /usr/bin/doxygen (found version "1.8.5") found components: doxygen missing components: dot -- Building MAPL as STATIC libraries -- Building with ExtData2G -- Found MPI: TRUE (found version "3.1") -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /data/home/liumy/tools/geos-chem-lib/lib/libhdf5.so;/data/home/liumy/tools/geos-chem-lib/lib/libz.so;/usr/lib64/libdl.so;/usr/lib64/libm.so (found version "1.10.8") -- Found Perl: /usr/bin/perl (found version "5.16.3") -- Found Python2: /data/home/liumy/tools/anaconda2/bin/python2.7 (found version "2.7.16") found components: Interpreter -- Performing Test DETECT_F2PY2_SUFFIX -- Performing Test DETECT_F2PY2_SUFFIX: FAILURE CMake Warning at ESMA_cmake/python/f2py2/try_f2py2_compile.cmake:36 (message): Test f2py2 compile using /data/home/liumy/tools/anaconda2/bin/f2py2.7 failed. F2PY2 modules will not be built. This usually indicates an incomplete Python/numpy installation. Call Stack (most recent call first): ESMA_cmake/python/f2py2/FindF2PY2.cmake:57 (try_f2py2_compile) src/GMAO_Shared/GEOS_Util/pre/NSIDC-OSTIA_SST-ICE_blend/CMakeLists.txt:55 (find_package) -- Could NOT find F2PY2 (missing: F2PY2_SUFFIX) (found version "2") -- Performing Test DETECT_F2PY2_SUFFIX -- Performing Test DETECT_F2PY2_SUFFIX: FAILURE CMake Warning at ESMA_cmake/python/f2py2/try_f2py2_compile.cmake:36 (message): Test f2py2 compile using /data/home/liumy/tools/anaconda2/bin/f2py2.7 failed. F2PY2 modules will not be built. This usually indicates an incomplete Python/numpy installation. Call Stack (most recent call first): ESMA_cmake/python/f2py2/FindF2PY2.cmake:57 (try_f2py2_compile) src/GMAO_Shared/GEOS_Util/pre/prepare_ocnExtData/CMakeLists.txt:23 (find_package) -- Could NOT find F2PY2 (missing: F2PY2_SUFFIX) (found version "2") -- Performing Test DETECT_F2PY2_SUFFIX -- Performing Test DETECT_F2PY2_SUFFIX: FAILURE CMake Warning at ESMA_cmake/python/f2py2/try_f2py2_compile.cmake:36 (message): Test f2py2 compile using /data/home/liumy/tools/anaconda2/bin/f2py2.7 failed. F2PY2 modules will not be built. This usually indicates an incomplete Python/numpy installation. Call Stack (most recent call first): ESMA_cmake/python/f2py2/FindF2PY2.cmake:57 (try_f2py2_compile) src/GMAO_Shared/GMAO_pyobs/CMakeLists.txt:14 (find_package) -- Could NOT find F2PY2 (missing: F2PY2_SUFFIX) (found version "2") -- Performing Test DETECT_F2PY2_SUFFIX -- Performing Test DETECT_F2PY2_SUFFIX: FAILURE CMake Warning at ESMA_cmake/python/f2py2/try_f2py2_compile.cmake:36 (message): Test f2py2 compile using /data/home/liumy/tools/anaconda2/bin/f2py2.7 failed. F2PY2 modules will not be built. This usually indicates an incomplete Python/numpy installation. Call Stack (most recent call first): ESMA_cmake/python/f2py2/FindF2PY2.cmake:57 (try_f2py2_compile) src/GMAO_Shared/GMAO_gfio/CMakeLists.txt:51 (find_package) -- Could NOT find F2PY2 (missing: F2PY2_SUFFIX) (found version "2") ================================================================= HEMCO 3.6.2 Current status: 3.6.2 ================================================================= ================================================================= GEOS-Chem 14.1.1 (science codebase) Current status: 14.1.1 ================================================================= -- Settings: * MECH: fullchem carbon custom * OMP: ON OFF * USE_REAL8: ON OFF * APM: ON OFF * RRTMG: ON OFF * GTMM: ON OFF * LUO_WETDEP: ON OFF -- Configuring done -- Generating done -- Build files have been written to: /data/home/liumy/GCHP/src/GCHP/build