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HPC_Users.md

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This is a manual for HPC users. It is based on job submission in MinSAR app

In this workflow, you need to create jobs and then run them in order

To create jobs, run:

minopyApp.py $PWD/PichinchaSenDT142.template --dir minopy --jobfiles

After the jobs are created, you may run them with one of the appropriate submit commands:

submit_jobs.bash $PWD/PichinchaSenDT142.template --minopy
(submit_jobs.bash $PWD/PichinchaSenDT142.template --dostep minopy)

submit_jobs.bash commmand can be used for running individual jobs in run_files:

sbatch_jobs.bash minopy/run_files/run_01_minopy_load_data 
submit_jobs.bash minopy/run_files/run_02_minopy_phase_linking
submit_jobs.bash minopy/run_files/run_03_minopy_concatenate_patch
submit_jobs.bash minopy/run_files/run_04_minopy_generate_ifgram
submit_jobs.bash minopy/run_files/run_05_minopy_unwrap_ifgram
submit_jobs.bash minopy/run_files/run_06_minopy_load_ifgram
submit_jobs.bash minopy/run_files/run_07_mintpy_ifgram_Correction 
submit_jobs.bash minopy/run_files/run_08_minopy_invert_network
submit_jobs.bash minopy/run_files/run_09_mintpy_timeseries_correction