.guix-deploy

# Fire up a GNU Guix container which can run gemma-wrapper

echo === To test try
echo alias gemma-wrapper="ruby bin/gemma-wrapper"
echo gemma-wrapper --force --json \
        --loco -- \
        -g test/data/input/BXD_geno.txt.gz \
        -p test/data/input/BXD_pheno.txt \
        -a test/data/input/BXD_snps.txt \
        -gk

# using Ruby2 because lmdb ext builder picks that
guix shell -L ~/guix-bioinformatics -C -F coreutils binutils ruby gemma-gn2 parallel which vim less xz tar python python-lmdb python-cffi time python-pandas