Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

GSL ERROR: vector length n must be positive integer in init_source.c at line 29 errno 4 #289

Open
forRoma1889 opened this issue Dec 8, 2024 · 0 comments

Comments

@forRoma1889
Copy link

gemma -bfile plink -epm 50kPi_bslmm.param.txt -emu 50kPi_bslmm.log.txt -ebv 50kPi_bslmm.bv.txt -k output.cXX.txt -predict 1 -o bslmm_Pi
I had some problems running this command.

Before running this command, I executed the following two commands:

gemma -bfile plink -gk 1 -o output  
gemma -bfile plink -bslmm 1 -o 50kPi_bslmm  

Both commands ran successfully and generated the following files:

  • 50kPi_bslmm.bv.txt
  • 50kPi_bslmm.gamma.txt
  • 50kPi_bslmm.hyp.txt
  • 50kPi_bslmm.log.txt
  • 50kPi_bslmm.param.txt
  • output.log.txt
  • output.cXX.txt

gemma -bfile plink -epm 50kPi_bslmm.param.txt -emu 50kPi_bslmm.log.txt -predict 1 -o test_output
GEMMA 0.98.3 (2020-11-28) by Xiang Zhou and team (C) 2012-2020
Reading Files ...

number of total individuals = 99

number of analyzed individuals = 99

number of covariates = 1

number of phenotypes = 1

GSL ERROR: vector length n must be positive integer in init_source.c at line 29 errno 4

But now I have this problem. I checked the previous files and found no problem. I sincerely ask for your answer

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant