You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Hi,
I am new to GWAS. I have dataset of 15K+ individuals and 200+ SNPs. I wanted to estimate the relatedness matrix, I used the following command.
gemma -bfile data_QC -gk 1 -o data_QC_gem
GEMMA 0.98.3 (2020-11-28) by Xiang Zhou and team (C) 2012-2020
Reading Files ...
number of total individuals = 15628
number of analyzed individuals = 2904
number of covariates = 1
number of phenotypes = 1
number of total SNPs/var = 270047
number of analyzed SNPs = 260663
Calculating Relatedness Matrix ...
======= 15%
It's been running for 4+ hours.
How much time it will take to complete?
Does it depend on computational resources on my machine?
Any help in this regard would be appreciated.
Thank you
The text was updated successfully, but these errors were encountered:
Hi,
I am new to GWAS. I have dataset of 15K+ individuals and 200+ SNPs. I wanted to estimate the relatedness matrix, I used the following command.
gemma -bfile data_QC -gk 1 -o data_QC_gem
GEMMA 0.98.3 (2020-11-28) by Xiang Zhou and team (C) 2012-2020
Reading Files ...
number of total individuals = 15628
number of analyzed individuals = 2904
number of covariates = 1
number of phenotypes = 1
number of total SNPs/var = 270047
number of analyzed SNPs = 260663
Calculating Relatedness Matrix ...
======= 15%
It's been running for 4+ hours.
How much time it will take to complete?
Does it depend on computational resources on my machine?
Any help in this regard would be appreciated.
Thank you
The text was updated successfully, but these errors were encountered: