Migrate from prefixcommons to bioregistry / prefixmaps

[kltm]

As discussed on the software call today, prefixcommons is out-of-date and should be replaced with bioregistry / prefixmaps.

Possibly, just updating the core of https://github.com/geneontology/curie-util-es5 (and https://github.com/geneontology/curie-util-py ?). Likely, some discussion between @tmushayahama and @sierra-moxon necessary.

@vanaukenk I'm not sure which issue this would be addressing, so I'm unsure of the appropriate project or priority.

[sierra-moxon]

It might be that replacing prefixcommons with prefixmaps completely, is a bit larger: https://github.com/search?q=org%3Ageneontology%20prefixcommons&type=code

but, the good news is that this is all kind of circular, prefixcommons, gets the go identity file from GO: https://github.com/prefixcommons/biocontext/blob/master/bin/go-xrefs-to-context.py and prefixmaps gets its identify file from GO too: https://github.com/linkml/prefixmaps/blob/main/src/prefixmaps/ingest/ingest_go.py

and, as prefixcommons provides a curie expansion/contraction library: https://github.com/prefixcommons/curie-util
so does prefixmaps: https://github.com/linkml/prefixmaps?tab=readme-ov-file via https://github.com/biopragmatics/curies. The curies package aligns directly with bioregistry.

so, there would be a lot of changes, but all easily testable, derived from the go-xrefs as a source of truth, and not too complicated to change.