go-reference-species.yaml

#### PANTHER_VERSION=19.0
- common_name: Amborella
  organism: Amborella trichopoda
  reference_proteome_short_name: AMBTC
  taxon_id: NCBITaxon:13333
- common_name: lizard
  organism: Anolis carolinensis
  reference_proteome_short_name: ANOCA
  taxon_id: NCBITaxon:28377
- common_name: mosquito
  organism: Anopheles gambiae
  reference_proteome_short_name: ANOGA
  taxon_id: NCBITaxon:7165
- common_name: aquifex
  organism: Aquifex aeolicus
  reference_proteome_short_name: AQUAE
  taxon_id: NCBITaxon:224324
- common_name: arabidopsis
  organism: Arabidopsis thaliana
  reference_proteome_short_name: ARATH
  taxon_id: NCBITaxon:3702
- common_name: bacillus_cereus
  organism: Bacillus cereus
  reference_proteome_short_name: BACCR
  taxon_id: NCBITaxon:226900
- common_name: bacillus_subtilis
  organism: Bacillus subtilis
  reference_proteome_short_name: BACSU
  taxon_id: NCBITaxon:224308
- common_name: bacteroidetes
  organism: Bacteroides thetaiotaomicron
  reference_proteome_short_name: BACTN
  taxon_id: NCBITaxon:226186
- common_name: chytrid
  organism: Batrachochytrium dendrobatidis
  reference_proteome_short_name: BATDJ
  taxon_id: NCBITaxon:684364
- common_name: cow
  organism: Bos taurus
  reference_proteome_short_name: BOVIN
  taxon_id: NCBITaxon:9913
- common_name: purple_false_brome
  organism: Brachypodium distachyon
  reference_proteome_short_name: BRADI
  taxon_id: NCBITaxon:15368
- common_name: bradyrhizobium
  organism: Bradyrhizobium diazoefficiens
  reference_proteome_short_name: BRADU
  taxon_id: NCBITaxon:224911
- common_name: branchiostoma
  organism: Branchiostoma floridae
  reference_proteome_short_name: BRAFL
  taxon_id: NCBITaxon:7739
- common_name: e_campestris
  organism: Brassica campestris
  reference_proteome_short_name: BRACM
  taxon_id: NCBITaxon:3711
- common_name: canola
  organism: Brassica napus
  reference_proteome_short_name: BRANA
  taxon_id: NCBITaxon:3708
- common_name: cabbage
  organism: Brassica rapa subsp. pekinensis
  reference_proteome_short_name: BRARP
  taxon_id: NCBITaxon:51351
- common_name: c_briggsae
  organism: Caenorhabditis briggsae
  reference_proteome_short_name: CAEBR
  taxon_id: NCBITaxon:6238
- common_name: nematode_worm
  organism: Caenorhabditis elegans
  reference_proteome_short_name: CAEEL
  taxon_id: NCBITaxon:6239
- common_name: candida
  organism: Candida albicans
  reference_proteome_short_name: CANAL
  taxon_id: NCBITaxon:237561
- common_name: dog
  organism: Canis lupus familiaris
  reference_proteome_short_name: CANLF
  taxon_id: NCBITaxon:9615
- common_name: bell pepper
  organism: Capsicum annuum
  reference_proteome_short_name: CAPAN
  taxon_id: NCBITaxon:4072
- common_name: chlamydia
  organism: Chlamydia trachomatis
  reference_proteome_short_name: CHLTR
  taxon_id: NCBITaxon:272561
- common_name: green_algae
  organism: Chlamydomonas reinhardtii
  reference_proteome_short_name: CHLRE
  taxon_id: NCBITaxon:3055
- common_name: chloroflexus
  organism: Chloroflexus aurantiacus
  reference_proteome_short_name: CHLAA
  taxon_id: NCBITaxon:324602
- common_name: ciona
  organism: Ciona intestinalis
  reference_proteome_short_name: CIOIN
  taxon_id: NCBITaxon:7719
- common_name: orange
  organism: Citrus sinensis
  reference_proteome_short_name: CITSI
  taxon_id: NCBITaxon:2711
- common_name: clostridium
  organism: Clostridium botulinum
  reference_proteome_short_name: CLOBH
  taxon_id: NCBITaxon:441771
- common_name: coxiella
  organism: Coxiella burnetii
  reference_proteome_short_name: COXBU
  taxon_id: NCBITaxon:227377
- common_name: cryptococcus
  organism: Cryptococcus neoformans
  reference_proteome_short_name: CRYNJ
  taxon_id: NCBITaxon:214684
- common_name: cucumber
  organism: Cucumis sativus
  reference_proteome_short_name: CUCSA
  taxon_id: NCBITaxon:3659
- common_name: zebrafish
  organism: Danio rerio
  reference_proteome_short_name: DANRE
  taxon_id: NCBITaxon:7955
- common_name: water_flea
  organism: Daphnia pulex
  reference_proteome_short_name: DAPPU
  taxon_id: NCBITaxon:6669
- common_name: deinococcus
  organism: Deinococcus radiodurans
  reference_proteome_short_name: DEIRA
  taxon_id: NCBITaxon:243230
- common_name: dictyoglomus
  organism: Dictyoglomus turgidum
  reference_proteome_short_name: DICTD
  taxon_id: NCBITaxon:515635
- common_name: dictyostelium
  organism: Dictyostelium discoideum
  reference_proteome_short_name: DICDI
  taxon_id: NCBITaxon:44689
- common_name: d_purpureum
  organism: Dictyostelium purpureum
  reference_proteome_short_name: DICPU
  taxon_id: NCBITaxon:5786
- common_name: fruit_fly
  organism: Drosophila melanogaster
  reference_proteome_short_name: DROME
  taxon_id: NCBITaxon:7227
- common_name: aspergillus
  organism: Emericella nidulans
  reference_proteome_short_name: EMENI
  taxon_id: NCBITaxon:227321
- common_name: e_histolytica
  organism: Entamoeba histolytica
  reference_proteome_short_name: ENTH1
  taxon_id: NCBITaxon:294381
- common_name: horse
  organism: Equus caballus
  reference_proteome_short_name: HORSE
  taxon_id: NCBITaxon:9796
- common_name: e_gossypii
  organism: Eremothecium gossypii
  reference_proteome_short_name: EREGS
  taxon_id: NCBITaxon:284811
- common_name: yellow monkey flower
  organism: Erythranthe guttata
  reference_proteome_short_name: ERYGU
  taxon_id: NCBITaxon:4155
- common_name: e_coli
  organism: Escherichia coli
  reference_proteome_short_name: ECOLI
  taxon_id: NCBITaxon:83333
- common_name: flooded gum
  organism: Eucalyptus grandis
  reference_proteome_short_name: EUCGR
  taxon_id: NCBITaxon:71139
- common_name: cat
  organism: Felis catus
  reference_proteome_short_name: FELCA
  taxon_id: NCBITaxon:9685
- common_name: fusobacterium
  organism: Fusobacterium nucleatum
  reference_proteome_short_name: FUSNN
  taxon_id: NCBITaxon:190304
- common_name: chicken
  organism: Gallus gallus
  reference_proteome_short_name: CHICK
  taxon_id: NCBITaxon:9031
- common_name: geobacter
  organism: Geobacter sulfurreducens
  reference_proteome_short_name: GEOSL
  taxon_id: NCBITaxon:243231
- common_name: giardia
  organism: Giardia intestinalis
  reference_proteome_short_name: GIAIC
  taxon_id: NCBITaxon:184922
- common_name: gloeobacter
  organism: Gloeobacter violaceus
  reference_proteome_short_name: GLOVI
  taxon_id: NCBITaxon:251221
- common_name: soybean
  organism: Glycine max
  reference_proteome_short_name: SOYBN
  taxon_id: NCBITaxon:3847
- common_name: gorilla
  organism: Gorilla gorilla gorilla
  reference_proteome_short_name: GORGO
  taxon_id: NCBITaxon:9595
- common_name: cotton
  organism: Gossypium hirsutum
  reference_proteome_short_name: GOSHI
  taxon_id: NCBITaxon:3635
- common_name: h_flu
  organism: Haemophilus influenzae
  reference_proteome_short_name: HAEIN
  taxon_id: NCBITaxon:71421
- common_name: halobacterium
  organism: Halobacterium salinarum
  reference_proteome_short_name: HALSA
  taxon_id: NCBITaxon:64091
- common_name: sunflower
  organism: Helianthus annuus
  reference_proteome_short_name: HELAN
  taxon_id: NCBITaxon:4232
- common_name: h_pylori
  organism: Helicobacter pylori
  reference_proteome_short_name: HELPY
  taxon_id: NCBITaxon:85962
- common_name: human
  organism: Homo sapiens
  reference_proteome_short_name: HUMAN
  taxon_id: NCBITaxon:9606
- common_name: barley
  organism: Hordeum vulgare subsp. vulgare
  reference_proteome_short_name: HORVV
  taxon_id: NCBITaxon:112509
- common_name: tick
  organism: Ixodes scapularis
  reference_proteome_short_name: IXOSC
  taxon_id: NCBITaxon:6945
- common_name: english walnut
  organism: Juglans regia
  reference_proteome_short_name: JUGRE
  taxon_id: NCBITaxon:51240
- common_name: green algae
  organism: Klebsormidium nitens
  reference_proteome_short_name: KLENI
  taxon_id: NCBITaxon:105231
- common_name: korarchaeum
  organism: Korarchaeum cryptofilum
  reference_proteome_short_name: KORCO
  taxon_id: NCBITaxon:374847
- common_name: garden lettuce
  organism: Lactuca sativa
  reference_proteome_short_name: LACSA
  taxon_id: NCBITaxon:4236
- common_name: leishmania
  organism: Leishmania major
  reference_proteome_short_name: LEIMA
  taxon_id: NCBITaxon:5664
- common_name: leptospira
  organism: Leptospira interrogans
  reference_proteome_short_name: LEPIN
  taxon_id: NCBITaxon:189518
- common_name: listeria
  organism: Listeria monocytogenes
  reference_proteome_short_name: LISMO
  taxon_id: NCBITaxon:169963
- common_name: macacque
  organism: Macaca mulatta
  reference_proteome_short_name: MACMU
  taxon_id: NCBITaxon:9544
- common_name: cassava
  organism: Manihot esculenta
  reference_proteome_short_name: MANES
  taxon_id: NCBITaxon:3983
- common_name: liverwort
  organism: Marchantia polymorpha
  reference_proteome_short_name: MARPO
  taxon_id: NCBITaxon:3197
- common_name: barrel medic
  organism: Medicago truncatula
  reference_proteome_short_name: MEDTR
  taxon_id: NCBITaxon:3880
- common_name: methanocaldococcus
  organism: Methanocaldococcus jannaschii
  reference_proteome_short_name: METJA
  taxon_id: NCBITaxon:243232
- common_name: methanosarcina
  organism: Methanosarcina acetivorans
  reference_proteome_short_name: METAC
  taxon_id: NCBITaxon:188937
- common_name: opossum
  organism: Monodelphis domestica
  reference_proteome_short_name: MONDO
  taxon_id: NCBITaxon:13616
- common_name: monosiga
  organism: Monosiga brevicollis
  reference_proteome_short_name: MONBE
  taxon_id: NCBITaxon:81824
- common_name: mouse
  organism: Mus musculus
  reference_proteome_short_name: MOUSE
  taxon_id: NCBITaxon:10090
- common_name: banana
  organism: Musa acuminata subsp. malaccensis
  reference_proteome_short_name: MUSAM
  taxon_id: NCBITaxon:214687
- common_name: mycobacterium
  organism: Mycobacterium tuberculosis
  reference_proteome_short_name: MYCTU
  taxon_id: NCBITaxon:83332
- common_name: meningococcus
  organism: Neisseria meningitidis serogroup b
  reference_proteome_short_name: NEIMB
  taxon_id: NCBITaxon:122586
- common_name: sacred lotus
  organism: Nelumbo nucifera
  reference_proteome_short_name: NELNU
  taxon_id: NCBITaxon:4432
- common_name: nematostella
  organism: Nematostella vectensis
  reference_proteome_short_name: NEMVE
  taxon_id: NCBITaxon:45351
- common_name: aspergillus
  organism: Neosartorya fumigata
  reference_proteome_short_name: ASPFU
  taxon_id: NCBITaxon:330879
- common_name: neurospora
  organism: Neurospora crassa
  reference_proteome_short_name: NEUCR
  taxon_id: NCBITaxon:367110
- common_name: tobacco
  organism: Nicotiana tabacum
  reference_proteome_short_name: TOBAC
  taxon_id: NCBITaxon:4097
- common_name: nitrosopumilu
  organism: Nitrosopumilus maritimus
  reference_proteome_short_name: NITMS
  taxon_id: NCBITaxon:436308
- common_name: platypus
  organism: Ornithorhynchus anatinus
  reference_proteome_short_name: ORNAN
  taxon_id: NCBITaxon:9258
- common_name: rice
  organism: Oryza sativa
  reference_proteome_short_name: ORYSJ
  taxon_id: NCBITaxon:39947
- common_name: oryzias
  organism: Oryzias latipes
  reference_proteome_short_name: ORYLA
  taxon_id: NCBITaxon:8090
- common_name: chimpanzee
  organism: Pan troglodytes
  reference_proteome_short_name: PANTR
  taxon_id: NCBITaxon:9598
- common_name: paramecium
  organism: Paramecium tetraurelia
  reference_proteome_short_name: PARTE
  taxon_id: NCBITaxon:5888
- common_name: phaeosphaeria
  organism: Phaeosphaeria nodorum
  reference_proteome_short_name: PHANO
  taxon_id: NCBITaxon:321614
- common_name: moss
  organism: Physcomitrella patens
  reference_proteome_short_name: PHYPA
  taxon_id: NCBITaxon:3218
- common_name: phytophthora
  organism: Phytophthora ramorum
  reference_proteome_short_name: PHYRM
  taxon_id: NCBITaxon:164328
- common_name: plasmodium
  organism: Plasmodium falciparum
  reference_proteome_short_name: PLAF7
  taxon_id: NCBITaxon:36329
- common_name: black_cottonwood
  organism: Populus trichocarpa
  reference_proteome_short_name: POPTR
  taxon_id: NCBITaxon:3694
- common_name: pristionchus
  organism: Pristionchus pacificus
  reference_proteome_short_name: PRIPA
  taxon_id: NCBITaxon:54126
- common_name: peach
  organism: Prunus persica
  reference_proteome_short_name: PRUPE
  taxon_id: NCBITaxon:3760
- common_name: pseudomonas
  organism: Pseudomonas aeruginosa
  reference_proteome_short_name: PSEAE
  taxon_id: NCBITaxon:208964
- common_name: puccinia
  organism: Puccinia graminis
  reference_proteome_short_name: PUCGT
  taxon_id: NCBITaxon:418459
- common_name: pyrobaculum
  organism: Pyrobaculum aerophilum
  reference_proteome_short_name: PYRAE
  taxon_id: NCBITaxon:178306
- common_name: rat
  organism: Rattus norvegicus
  reference_proteome_short_name: RAT
  taxon_id: NCBITaxon:10116
- common_name: rhodopirellula
  organism: Rhodopirellula baltica
  reference_proteome_short_name: RHOBA
  taxon_id: NCBITaxon:243090
- common_name: bean
  organism: Ricinus communis
  reference_proteome_short_name: RICCO
  taxon_id: NCBITaxon:3988
- common_name: budding_yeast
  organism: Saccharomyces cerevisiae
  reference_proteome_short_name: YEAST
  taxon_id: NCBITaxon:559292
- common_name: salmonella
  organism: Salmonella typhimurium
  reference_proteome_short_name: SALTY
  taxon_id: NCBITaxon:99287
- common_name: s_japonicus
  organism: Schizosaccharomyces japonicus
  reference_proteome_short_name: SCHJY
  taxon_id: NCBITaxon:402676
- common_name: fission_yeast
  organism: Schizosaccharomyces pombe
  reference_proteome_short_name: SCHPO
  taxon_id: NCBITaxon:4896
- common_name: sclerotinia
  organism: Sclerotinia sclerotiorum
  reference_proteome_short_name: SCLS1
  taxon_id: NCBITaxon:665079
- common_name: spikemoss
  organism: Selaginella moellendorffii
  reference_proteome_short_name: SELML
  taxon_id: NCBITaxon:88036
- common_name: millet
  organism: Setaria italica
  reference_proteome_short_name: SETIT
  taxon_id: NCBITaxon:4555
- common_name: shewanella
  organism: Shewanella oneidensis
  reference_proteome_short_name: SHEON
  taxon_id: NCBITaxon:211586
- common_name: tomato
  organism: Solanum lycopersicum
  reference_proteome_short_name: SOLLC
  taxon_id: NCBITaxon:4081
- common_name: potato
  organism: Solanum tuberosum
  reference_proteome_short_name: SOLTU
  taxon_id: NCBITaxon:4113
- common_name: sorghum
  organism: Sorghum bicolor
  reference_proteome_short_name: SORBI
  taxon_id: NCBITaxon:4558
- common_name: spinach
  organism: Spinacia oleracea
  reference_proteome_short_name: SPIOL
  taxon_id: NCBITaxon:3562
- common_name: staph
  organism: Staphylococcus aureus
  reference_proteome_short_name: STAA8
  taxon_id: NCBITaxon:93061
- common_name: strep
  organism: Streptococcus pneumoniae
  reference_proteome_short_name: STRR6
  taxon_id: NCBITaxon:171101
- common_name: streptomyces
  organism: Streptomyces coelicolor
  reference_proteome_short_name: STRCO
  taxon_id: NCBITaxon:100226
- common_name: sea_urchin
  organism: Strongylocentrotus purpuratus
  reference_proteome_short_name: STRPU
  taxon_id: NCBITaxon:7668
- common_name: sulfolobus
  organism: Sulfolobus solfataricus
  reference_proteome_short_name: SACS2
  taxon_id: NCBITaxon:273057
- common_name: pig
  organism: Sus scrofa
  reference_proteome_short_name: PIG
  taxon_id: NCBITaxon:9823
- common_name: synechocystis
  organism: Synechocystis
  reference_proteome_short_name: SYNY3
  taxon_id: NCBITaxon:1111708
- common_name: thalassiosira
  organism: Thalassiosira pseudonana
  reference_proteome_short_name: THAPS
  taxon_id: NCBITaxon:35128
- common_name: cacao
  organism: Theobroma cacao
  reference_proteome_short_name: THECC
  taxon_id: NCBITaxon:3641
- common_name: thermococcus
  organism: Thermococcus kodakaraensis
  reference_proteome_short_name: THEKO
  taxon_id: NCBITaxon:69014
- common_name: thermodesulfovibrio
  organism: Thermodesulfovibrio yellowstonii
  reference_proteome_short_name: THEYD
  taxon_id: NCBITaxon:289376
- common_name: thermotoga
  organism: Thermotoga maritima
  reference_proteome_short_name: THEMA
  taxon_id: NCBITaxon:243274
- common_name: tribolium
  organism: Tribolium castaneum
  reference_proteome_short_name: TRICA
  taxon_id: NCBITaxon:7070
- common_name: trichomonas
  organism: Trichomonas vaginalis
  reference_proteome_short_name: TRIV3
  taxon_id: NCBITaxon:412133
- common_name: trichoplax
  organism: Trichoplax adhaerens
  reference_proteome_short_name: TRIAD
  taxon_id: NCBITaxon:10228
- common_name: wheat
  organism: Triticum aestivum
  reference_proteome_short_name: WHEAT
  taxon_id: NCBITaxon:4565
- common_name: t_brucei
  organism: Trypanosoma brucei
  reference_proteome_short_name: TRYB2
  taxon_id: NCBITaxon:185431
- common_name: ustilago
  organism: Ustilago maydis
  reference_proteome_short_name: USTMA
  taxon_id: NCBITaxon:237631
- common_name: cholera
  organism: Vibrio cholerae
  reference_proteome_short_name: VIBCH
  taxon_id: NCBITaxon:243277
- common_name: grape
  organism: Vitis vinifera
  reference_proteome_short_name: VITVI
  taxon_id: NCBITaxon:29760
- common_name: xanthomonas
  organism: Xanthomonas campestris
  reference_proteome_short_name: XANCP
  taxon_id: NCBITaxon:190485
- common_name: x_laevis
  organism: Xenopus laevis
  reference_proteome_short_name: XENLA
  taxon_id: NCBITaxon:8355
- common_name: frog
  organism: Xenopus tropicalis
  reference_proteome_short_name: XENTR
  taxon_id: NCBITaxon:8364
- common_name: yarrowia
  organism: Yarrowia lipolytica
  reference_proteome_short_name: YARLI
  taxon_id: NCBITaxon:284591
- common_name: yersinia
  organism: Yersinia pestis
  reference_proteome_short_name: YERPE
  taxon_id: NCBITaxon:632
- common_name: maize
  organism: Zea mays
  reference_proteome_short_name: MAIZE
  taxon_id: NCBITaxon:4577
- common_name: eelgrass
  organism: Zostera marina
  reference_proteome_short_name: ZOSMR
  taxon_id: NCBITaxon:29655
- common_name: helobdella
  organism: helobdella robusta
  reference_proteome_short_name: HELRO
  taxon_id: NCBITaxon:6412
- common_name: lepisosteudae
  organism: lepisosteus oculatus
  reference_proteome_short_name: LEPOC
  taxon_id: NCBITaxon:7918
- common_name: m_genitalium
  organism: mycoplasma genitalium
  reference_proteome_short_name: MYCGE
  taxon_id: NCBITaxon:243273