ecocyc.yaml

id: ecocyc
label: Encyclopedia of E. coli metabolism
description: "GO data for E. coli Encyclopedia"
project_name: "EcoCyc and EcoliWiki collaborative annotation for E. coli K-12"
contact_email: "biocyc-support@ai.sri.com"
project_url: "http://ecocyc.org"
funding_source: "NIH/NIGMS GM077678"
email_report: "biocyc-support@ai.sri.com"
datasets:
  - id: ecocyc.gaf
    label: "ecocyc gaf file"
    description: "gaf file for ecocyc from Encyclopedia of E. coli metabolism"
    url: https://current.geneontology.org/annotations/ecocyc.gaf.gz
    type: gaf
    dataset: ecocyc
    submitter: ecocyc
    source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/proteomes/18.E_coli_MG1655.goa
    entity_type:
    status: active
    species_code: Ecol
    taxa:
      - NCBITaxon:83333
  - id: ecocyc.gpi
    label: "ecocyc gpi file"
    description: "gpi file for Escherichia coli from EcoCyc"
    url: https://current.geneontology.org/annotations/ecocyc.gpi.gz
    type: gpi
    dataset: ecocyc
    submitter: ecocyc
    compression: gzip
    source: https://www.ai.sri.com/~kr/go/latest/ecocyc.gpi.gz
    entity_type:
    status: active
    species_code: Ecol
    taxa:
      - NCBITaxon:83333