links.yml

API_Getting_Started: output/dist/API/Users_Guide/Getting_Started
API_Search_and_Retrieval: output/dist/API/Users_Guide/Search_and_Retrieval
API_Downloading_Files: output/dist/API/Users_Guide/Downloading_Files
API_Data_Analysis: output/dist/API/Users_Guide/Data_Analysis
API_BAM_Slicing: output/dist/API/Users_Guide/BAM_Slicing
API_Submission: output/dist/API/Users_Guide/Submission
API_Python_Examples: output/dist/API/Users_Guide/Python_Examples
API_GraphQL_Examples: output/dist/API/Users_Guide/GraphQL_Examples
API_System_Information: output/dist/API/Users_Guide/System_Information
API_Additional_Examples: output/dist/API/Users_Guide/Additional_Examples
API_Appendix_A_Available_Fields: output/dist/API/Users_Guide/Appendix_A:_Available_Fields
API_Appendix_B_Key_Terms: output/dist/API/Users_Guide/Appendix_B:_Key_Terms
API_Appendix_C_Format_of_Submission_Requests_and_Responses: output/dist/API/Users_Guide/Appendix_C:_Format_of_Submission_Queries_and_Responses
API_API_Release_Notes: output/dist/API/Release_Notes/Release_Notes
API_index: output/dist/API/PDF/fafiletext_Download_PDF_/API/PDF/API_UG.pdf
Data_Portal_Getting_Started: output/dist/Data_Portal/Users_Guide/Getting_Started
Data_Portal_Projects: output/dist/Data_Portal/Users_Guide/Projects
Data_Portal_Exploration: output/dist/Data_Portal/Users_Guide/Exploration
Data_Portal_Custom_Set_Analysis: output/dist/Data_Portal/Users_Guide/Analysis
Data_Portal_Repository: output/dist/Data_Portal/Users_Guide/Repository
Data_Portal_Advanced_Search: output/dist/Data_Portal/Users_Guide/Advanced_Search
Data_Portal_Cart: output/dist/Data_Portal/Users_Guide/Cart_and_File_Download
Data_Portal_Legacy_Archive: output/dist/Data_Portal/Users_Guide/Legacy_Archive
Data_Portal_Data_Portal_Release_Notes: output/dist/Data_Portal/Release_Notes/Release_Notes
Data_Portal_index: output/dist/Data_Portal/PDF/fafiletext_Download_PDF_/Data_Portal/PDF/Data_Portal_UG.pdf
Data_Submission_Portal_Checklist: output/dist/Data_Submission/Users_Guide/Before_Submitting_Data_to_the_GDC_Portal
Data_Submission_Portal_Data_Submission_Overview: output/dist/Data_Submission/Users_Guide/Data_Submission_Overview
Data_Submission_Portal_Data_Submission_Process: output/dist/Data_Submission/Users_Guide/Data_Submission_Portal
Data_Submission_Portal_Data_Submission_Walkthrough: output/dist/Data_Submission/Users_Guide/Data_Upload_Walkthrough
Data_Submission_Portal_Pre_Release_QC: output/dist/Data_Submission/Users_Guide/PreRelease_Data_Portal
Data_Submission_Portal_Best_Practices: output/dist/Data_Submission/Users_Guide/Submission_Best_Practices
Data_Submission_Portal_Data_Submission_Portal_Release_Notes: output/dist/Data_Submission/Release_Notes/Release_Notes
Data_Submission_Portal_index: output/dist/Data_Submission/PDF/fafiletext_Download_PDF_/Data_Submission_Portal/PDF/Data_Submission_Portal_UG.pdf
Data_Transfer_Tool_Getting_Started: output/dist/Data_Transfer_Tool/Users_Guide/Getting_Started
Data_Transfer_Tool_Preparing_for_Data_Download_and_Upload: output/dist/Data_Transfer_Tool/Users_Guide/Preparing_for_Data_Download_and_Upload
Data_Transfer_Tool_Data_Download_and_Upload: output/dist/Data_Transfer_Tool/Users_Guide/Data_Transfer_Tool_Command_Line_Documentation
Data_Transfer_Tool_DTT_Release_Notes: output/dist/Data_Transfer_Tool/Release_Notes/Release_Notes_Command_Line
Data_Transfer_Tool_Data_Download_DTT_UI: output/dist/Data_Transfer_Tool/Users_Guide/Data_Transfer_Tool_UI_Documentation
Data_Transfer_Tool_DTT_UI_Release_Notes: output/dist/Data_Transfer_Tool/Release_Notes/Release_Notes_UI
Data_Transfer_Tool_Appendix_B_TroubleShooting: output/dist/Data_Transfer_Tool/Users_Guide/Troubleshooting_Guide
Data_Transfer_Tool_index: output/dist/Data_Transfer_Tool/PDF/fafiletext_Download_PDF_/Data_Transfer_Tool/PDF/Data_Transfer_Tool_UG.pdf
Data_Dictionary_index: output/dist/Data_Dictionary/About
Data_Dictionary_viewer: output/dist/Data_Dictionary/Viewer
Data_Dictionary_gdcmvs: output/dist/Data_Dictionary/Search
Data_Dictionary_Data_Dictionary_Release_Notes: output/dist/Data_Dictionary/Release_Notes/Release_Notes
Data_Introduction: output/dist/Data/Introduction
Data_GDC_Data_Model: output/dist/Data/Data_Model/GDC_Data_Model
Data_Data_Security: output/dist/Data/Data_Security/Data_Security
Data_MAF_Format: output/dist/Data/File_Formats/File_Format:_MAF
Data_VCF_Format: output/dist/Data/File_Formats/File_Format:_VCF
Data_DNA_Seq_Variant_Calling_Pipeline: output/dist/Data/Bioinformatics_Pipelines/Bioinformatics_Pipeline:_DNASeq_Analysis
Data_Expression_mRNA_Pipeline: output/dist/Data/Bioinformatics_Pipelines/Bioinformatics_Pipeline:_mRNA_Analysis
Data_miRNA_Pipeline: output/dist/Data/Bioinformatics_Pipelines/Bioinformatics_Pipeline:_miRNA_Analysis
Data_CNV_Pipeline: output/dist/Data/Bioinformatics_Pipelines/Bioinformatics_Pipeline:_Copy_Number_Variation_Analysis
Data_Methylation_Pipeline: output/dist/Data/Bioinformatics_Pipelines/Bioinformatics_Pipeline:_Methylation_Liftover_Pipeline
Data_RPPA_intro: output/dist/Data/Bioinformatics_Pipelines/Bioinformatics_Pipeline:_Protein_Expression
Data_Aligned_reads_summary_metrics: output/dist/Data/Bioinformatics_Pipelines/Aligned_Reads_Summary_Metrics
Data_Data_Release_Notes: output/dist/Data/Release_Notes/Release_Notes
Data_index: output/dist/Data/PDF/fafiletext_Download_PDF_/Data/PDF/Data_UG.pdf
Encyclopedia_Affymetrix_SNP_6.0: output/dist/Encyclopedia/pages/Affymetrix_SNP_6.0
Encyclopedia_Annotations: output/dist/Encyclopedia/pages/Annotations
Encyclopedia_Annotations_TCGA: output/dist/Encyclopedia/pages/Annotations_TCGA
Encyclopedia_Aggregated_Somatic_Mutation: output/dist/Encyclopedia/pages/Aggregated_Somatic_Mutation
Encyclopedia_Aliquot: output/dist/Encyclopedia/pages/Aliquot
Encyclopedia_Biospecimen_Data: output/dist/Encyclopedia/pages/Biospecimen_Data
Encyclopedia_Case: output/dist/Encyclopedia/pages/Case
Encyclopedia_Cancer_Genomics_Hub: output/dist/Encyclopedia/pages/Cancer_Genomics_Hub
Encyclopedia_Center_for_Cancer_Genomics: output/dist/Encyclopedia/pages/Center_for_Cancer_Genomics
Encyclopedia_Clinical_Data: output/dist/Encyclopedia/pages/Clinical_Data
Encyclopedia_Clinical_Supplement: output/dist/Encyclopedia/pages/Clinical_Supplement
Encyclopedia_Controlled_Access: output/dist/Encyclopedia/pages/Controlled_Access
Encyclopedia_Data_Access_Policy: output/dist/Encyclopedia/pages/Data_Access_Policy
Encyclopedia_Data_Submitter: output/dist/Encyclopedia/pages/Data_Submitter
Encyclopedia_dbGaP: output/dist/Encyclopedia/pages/dbGaP
Encyclopedia_Entity: output/dist/Encyclopedia/pages/Entity
Encyclopedia_GDC_API: output/dist/Encyclopedia/pages/GDC_API
Encyclopedia_GDC_Data_Portal: output/dist/Encyclopedia/pages/GDC_Data_Portal
Encyclopedia_GDC_Data_Submission_Portal: output/dist/Encyclopedia/pages/GDC_Data_Submission_Portal
Encyclopedia_GDC_Data_Transfer_Tool: output/dist/Encyclopedia/pages/GDC_Data_Transfer_Tool
Encyclopedia_GDC_Documentation_Site: output/dist/Encyclopedia/pages/GDC_Documentation_Site
Encyclopedia_GDC_Web_Site: output/dist/Encyclopedia/pages/GDC_Web_Site
Encyclopedia_Genomic_Data_Analysis_Network: output/dist/Encyclopedia/pages/Genomic_Data_Analysis_Network_(GDAN)
Encyclopedia_Genomic_Data_Commons: output/dist/Encyclopedia/pages/Genomic_Data_Commons
Encyclopedia_Harmonized_Data: output/dist/Encyclopedia/pages/Harmonized_Data
Encyclopedia_HTSeq-Counts: output/dist/Encyclopedia/pages/HTSeqCounts
Encyclopedia_HTSeq-FPKM-UQ: output/dist/Encyclopedia/pages/HTSeqFPKMUQ
Encyclopedia_HTSeq-FPKM: output/dist/Encyclopedia/pages/HTSeqFPKM
Encyclopedia_Latest_Data: output/dist/Encyclopedia/pages/Latest_Data
Encyclopedia_Manifest_File: output/dist/Encyclopedia/pages/Manifest_File
Encyclopedia_MD5_Checksum: output/dist/Encyclopedia/pages/MD5_Checksum
Encyclopedia_Mutation_Annotation_Format: output/dist/Encyclopedia/pages/Mutation_Annotation_Format
Encyclopedia_Mutation_Annotation_Format_TCGAv2: output/dist/Encyclopedia/pages/Mutation_Annotation_Format_Legacy
Encyclopedia_Redaction: output/dist/Encyclopedia/pages/Redaction
Encyclopedia_Release_Number: output/dist/Encyclopedia/pages/Release_Number
Encyclopedia_REST_API: output/dist/Encyclopedia/pages/REST_API
Encyclopedia_RNA-Seq: output/dist/Encyclopedia/pages/RNASeq
Encyclopedia_Sequence_Trace_File: output/dist/Encyclopedia/pages/Sequence_Trace_File
Encyclopedia_SNP_Array-Based_Data: output/dist/Encyclopedia/pages/SNP_ArrayBased_Data
Encyclopedia_TCGA_Barcode: output/dist/Encyclopedia/pages/TCGA_Barcode
Encyclopedia_TCIA: output/dist/Encyclopedia/pages/TCIA
Encyclopedia_UUID: output/dist/Encyclopedia/pages/UUID
Encyclopedia_Variant_Call_Format: output/dist/Encyclopedia/pages/Variant_Call_Format
Encyclopedia_TCGA_VCF_1.1v2: output/dist/Encyclopedia/pages/Variant_Call_Format_Legacy
Encyclopedia_Variant_Type: output/dist/Encyclopedia/pages/Variant_Type