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log.atmosphere.0000.out
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log.atmosphere.0000.out
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----------------------------------------------------------------------
Beginning MPAS-atmosphere Output Log File for task 0 of 72
Opened at 2019/03/26 16:16:17
----------------------------------------------------------------------
Using default single-precision reals
Reading namelist from file namelist.atmosphere
Reading streams configuration from file streams.atmosphere
Found mesh stream with filename template x1.163842.init.nc
Using io_type NetCDF-4/HDF5 for mesh stream
** Attempting to bootstrap MPAS framework using stream: input
Bootstrapping framework with mesh fields from input file 'x1.163842.init.nc'
* Requested field u10 is deactivated due to packages, or is a scratch variable.
* Requested field v10 is deactivated due to packages, or is a scratch variable.
* Requested field q2 is deactivated due to packages, or is a scratch variable.
* Requested field t2m is deactivated due to packages, or is a scratch variable.
* Requested field rainprod is deactivated due to packages, or is a scratch variable.
* Requested field evapprod is deactivated due to packages, or is a scratch variable.
* Requested field re_cloud is deactivated due to packages, or is a scratch variable.
* Requested field re_ice is deactivated due to packages, or is a scratch variable.
* Requested field re_snow is deactivated due to packages, or is a scratch variable.
* Requested field nt_c is deactivated due to packages, or is a scratch variable.
* Requested field mu_c is deactivated due to packages, or is a scratch variable.
* Requested field refl10cm_max is deactivated due to packages, or is a scratch variable.
* Requested field i_rainnc is deactivated due to packages, or is a scratch variable.
* Requested field rainncv is deactivated due to packages, or is a scratch variable.
* Requested field rainnc is deactivated due to packages, or is a scratch variable.
* Requested field snownc is deactivated due to packages, or is a scratch variable.
* Requested field graupelnc is deactivated due to packages, or is a scratch variable.
* Requested field i_rainc is deactivated due to packages, or is a scratch variable.
* Requested field cuprec is deactivated due to packages, or is a scratch variable.
* Requested field rainc is deactivated due to packages, or is a scratch variable.
* Requested field raincv is deactivated due to packages, or is a scratch variable.
* Requested field nca is deactivated due to packages, or is a scratch variable.
* Requested field cubot is deactivated due to packages, or is a scratch variable.
* Requested field cutop is deactivated due to packages, or is a scratch variable.
* Requested field w0avg is deactivated due to packages, or is a scratch variable.
* Requested field qcg is deactivated due to packages, or is a scratch variable.
* Requested field sh3d is deactivated due to packages, or is a scratch variable.
* Requested field qke is deactivated due to packages, or is a scratch variable.
* Requested field qke_adv is deactivated due to packages, or is a scratch variable.
* Requested field cov is deactivated due to packages, or is a scratch variable.
* Requested field qsq is deactivated due to packages, or is a scratch variable.
* Requested field tsq is deactivated due to packages, or is a scratch variable.
* Requested field tke_pbl is deactivated due to packages, or is a scratch variable.
* Requested field wstar is deactivated due to packages, or is a scratch variable.
* Requested field delta is deactivated due to packages, or is a scratch variable.
* Requested field el_pbl is deactivated due to packages, or is a scratch variable.
* Requested field ch is deactivated due to packages, or is a scratch variable.
* Requested field kpbl is deactivated due to packages, or is a scratch variable.
* Requested field hpbl is deactivated due to packages, or is a scratch variable.
* Requested field hfx is deactivated due to packages, or is a scratch variable.
* Requested field mavail is deactivated due to packages, or is a scratch variable.
* Requested field mol is deactivated due to packages, or is a scratch variable.
* Requested field qfx is deactivated due to packages, or is a scratch variable.
* Requested field qsfc is deactivated due to packages, or is a scratch variable.
* Requested field ust is deactivated due to packages, or is a scratch variable.
* Requested field ustm is deactivated due to packages, or is a scratch variable.
* Requested field zol is deactivated due to packages, or is a scratch variable.
* Requested field br is deactivated due to packages, or is a scratch variable.
* Requested field cd is deactivated due to packages, or is a scratch variable.
* Requested field cda is deactivated due to packages, or is a scratch variable.
* Requested field chs is deactivated due to packages, or is a scratch variable.
* Requested field chs2 is deactivated due to packages, or is a scratch variable.
* Requested field cqs2 is deactivated due to packages, or is a scratch variable.
* Requested field ck is deactivated due to packages, or is a scratch variable.
* Requested field cka is deactivated due to packages, or is a scratch variable.
* Requested field cpm is deactivated due to packages, or is a scratch variable.
* Requested field flhc is deactivated due to packages, or is a scratch variable.
* Requested field flqc is deactivated due to packages, or is a scratch variable.
* Requested field gz1oz0 is deactivated due to packages, or is a scratch variable.
* Requested field lh is deactivated due to packages, or is a scratch variable.
* Requested field psim is deactivated due to packages, or is a scratch variable.
* Requested field psih is deactivated due to packages, or is a scratch variable.
* Requested field qgh is deactivated due to packages, or is a scratch variable.
* Requested field regime is deactivated due to packages, or is a scratch variable.
* Requested field rmol is deactivated due to packages, or is a scratch variable.
* Requested field wspd is deactivated due to packages, or is a scratch variable.
* Requested field fh is deactivated due to packages, or is a scratch variable.
* Requested field fm is deactivated due to packages, or is a scratch variable.
* Requested field u10 is deactivated due to packages, or is a scratch variable.
* Requested field v10 is deactivated due to packages, or is a scratch variable.
* Requested field q2 is deactivated due to packages, or is a scratch variable.
* Requested field t2m is deactivated due to packages, or is a scratch variable.
* Requested field th2m is deactivated due to packages, or is a scratch variable.
* Requested field k22_shallow is deactivated due to packages, or is a scratch variable.
* Requested field kbcon_shallow is deactivated due to packages, or is a scratch variable.
* Requested field ktop_shallow is deactivated due to packages, or is a scratch variable.
* Requested field ktop_deep is deactivated due to packages, or is a scratch variable.
* Requested field xmb_total is deactivated due to packages, or is a scratch variable.
* Requested field xmb_shallow is deactivated due to packages, or is a scratch variable.
* Requested field qc_cu is deactivated due to packages, or is a scratch variable.
* Requested field qi_cu is deactivated due to packages, or is a scratch variable.
* Requested field rthcuten is deactivated due to packages, or is a scratch variable.
* Requested field rqvcuten is deactivated due to packages, or is a scratch variable.
* Requested field rqccuten is deactivated due to packages, or is a scratch variable.
* Requested field rqicuten is deactivated due to packages, or is a scratch variable.
* Requested field rqrcuten is deactivated due to packages, or is a scratch variable.
* Requested field rqscuten is deactivated due to packages, or is a scratch variable.
* Requested field rqvdynten is deactivated due to packages, or is a scratch variable.
* Requested field rthdynten is deactivated due to packages, or is a scratch variable.
* Requested field rucuten is deactivated due to packages, or is a scratch variable.
* Requested field rvcuten is deactivated due to packages, or is a scratch variable.
* Requested field rublten is deactivated due to packages, or is a scratch variable.
* Requested field rvblten is deactivated due to packages, or is a scratch variable.
* Requested field rthblten is deactivated due to packages, or is a scratch variable.
* Requested field rqvblten is deactivated due to packages, or is a scratch variable.
* Requested field rqcblten is deactivated due to packages, or is a scratch variable.
* Requested field rqiblten is deactivated due to packages, or is a scratch variable.
* Requested field rniblten is deactivated due to packages, or is a scratch variable.
* Requested field scalars_amb is deactivated due to packages, or is a scratch variable.
* Requested field u_amb is deactivated due to packages, or is a scratch variable.
* Requested field rho_amb is deactivated due to packages, or is a scratch variable.
* Requested field theta_amb is deactivated due to packages, or is a scratch variable.
Parsing run-time I/O configuration from streams.atmosphere ...
----- found immutable stream "input" in streams.atmosphere -----
filename template: x1.163842.init.nc
filename interval: none
I/O type: NetCDF-4/HDF5
direction: input
reference time: initial_time
record interval: -
real precision: 8 bytes
input alarm: initial_only
----- found immutable stream "restart" in streams.atmosphere -----
filename template: restart.$Y-$M-$D_$h.$m.$s.nc
filename interval: none
direction: input, output
reference time: initial_time
record interval: -
input alarm: initial_only
output alarm: none
----- found immutable stream "iau" in streams.atmosphere -----
filename template: x1.163842.AmB.$Y-$M-$D_$h.$m.$s.nc
filename interval: none
direction: input
reference time: initial_time
record interval: -
input alarm: initial_only
package: iau
----- found stream "output" in streams.atmosphere -----
filename template: history.$Y-$M-$D_$h.$m.$s.nc
filename interval: none
direction: output
reference time: initial_time
record interval: -
output alarm: none
* Requested field i_rainnc is deactivated due to packages, or is a scratch variable.
* Requested field rainnc is deactivated due to packages, or is a scratch variable.
* Requested field cuprec is deactivated due to packages, or is a scratch variable.
* Requested field i_rainc is deactivated due to packages, or is a scratch variable.
* Requested field rainc is deactivated due to packages, or is a scratch variable.
* Requested field kpbl is deactivated due to packages, or is a scratch variable.
* Requested field hpbl is deactivated due to packages, or is a scratch variable.
* Requested field hfx is deactivated due to packages, or is a scratch variable.
* Requested field qfx is deactivated due to packages, or is a scratch variable.
* Requested field cd is deactivated due to packages, or is a scratch variable.
* Requested field cda is deactivated due to packages, or is a scratch variable.
* Requested field ck is deactivated due to packages, or is a scratch variable.
* Requested field cka is deactivated due to packages, or is a scratch variable.
* Requested field lh is deactivated due to packages, or is a scratch variable.
* Requested field u10 is deactivated due to packages, or is a scratch variable.
* Requested field v10 is deactivated due to packages, or is a scratch variable.
* Requested field q2 is deactivated due to packages, or is a scratch variable.
* Requested field t2m is deactivated due to packages, or is a scratch variable.
* Requested field th2m is deactivated due to packages, or is a scratch variable.
----- found stream "diagnostics" in streams.atmosphere -----
filename template: diag.$Y-$M-$D_$h.$m.$s.nc
filename interval: none
direction: output
reference time: initial_time
record interval: -
output alarm: none
* Requested field rainc is deactivated due to packages, or is a scratch variable.
* Requested field rainnc is deactivated due to packages, or is a scratch variable.
* Requested field refl10cm_max is deactivated due to packages, or is a scratch variable.
* Requested field refl10cm_1km is deactivated due to packages, or is a scratch variable.
* Requested field refl10cm_1km_max is deactivated due to packages, or is a scratch variable.
* Requested field u10 is deactivated due to packages, or is a scratch variable.
* Requested field v10 is deactivated due to packages, or is a scratch variable.
* Requested field q2 is deactivated due to packages, or is a scratch variable.
* Requested field t2m is deactivated due to packages, or is a scratch variable.
* Requested field th2m is deactivated due to packages, or is a scratch variable.
----- found stream "surface" in streams.atmosphere -----
filename template: x1.163842.sfc_update.nc
filename interval: none
direction: input
reference time: initial_time
record interval: -
input alarm: none
----- done parsing run-time I/O from streams.atmosphere -----
Reading dimensions from input streams ...
----- reading dimensions from stream 'input' using file x1.163842.init.nc
nVertLevels = 56
nCells = 163842
nEdges = 491520
nVertices = 327680
TWO = 2
maxEdges = 10
maxEdges2 = 20
R3 = 3
vertexDegree = 3
nVertLevelsP1 = 57
FIFTEEN = 15
nMonths = 12
nSoilLevels = 4
*** unable to open input file restart.2010-10-23_00.00.00.nc for stream 'restart'
*** unable to open input file x1.163842.AmB.2010-10-23_00.00.00.nc for stream 'iau'
*** unable to open input file x1.163842.sfc_update.nc for stream 'surface'
----- done reading dimensions from input streams -----
Processing decomposed dimensions ...
----- done processing decomposed dimensions -----
Assigning remaining dimensions from definitions in Registry.xml ...
THREE = 3
TWENTYONE = 21
nLags = 140 (input_soil_temperature_lag)
nOznLevels = 59 (noznlev)
nAerLevels = 29 (naerlev)
cam_dim1 = 4 (camdim1)
nVertLevelsP2 = 58
nIsoLevelsT = 5
nIsoLevelsZ = 13
----- done assigning dimensions from Registry.xml -----
min/max of meshScalingDel2 = 1.00000 1.00000
min/max of meshScalingDel4 = 1.00000 1.00000
Begin timestep 2010-10-23_00:00:00
split dynamics-transport integration 3
global min, max w -1.15221 1.20006
global min, max u -89.1803 89.2348
Timing for integration step: 1.06114 s
Begin timestep 2010-10-23_00:06:00
split dynamics-transport integration 3
global min, max w -1.58674 0.978922
global min, max u -96.8845 89.1512
Timing for integration step: 1.05468 s
Begin timestep 2010-10-23_00:12:00
split dynamics-transport integration 3
global min, max w -1.71366 0.663158
global min, max u -102.033 91.9065
Timing for integration step: 1.05685 s
Begin timestep 2010-10-23_00:18:00
split dynamics-transport integration 3
global min, max w -1.57913 0.590860
global min, max u -89.6595 101.575
Timing for integration step: 1.05688 s
Begin timestep 2010-10-23_00:24:00
split dynamics-transport integration 3
global min, max w -1.55077 0.547988
global min, max u -89.3237 96.1490
Timing for integration step: 1.06943 s
Begin timestep 2010-10-23_00:30:00
split dynamics-transport integration 3
global min, max w -1.54174 0.487703
global min, max u -89.1400 93.3754
Timing for integration step: 1.05539 s
Begin timestep 2010-10-23_00:36:00
split dynamics-transport integration 3
global min, max w -1.51400 0.431645
global min, max u -88.9330 90.8665
Timing for integration step: 1.05960 s
Begin timestep 2010-10-23_00:42:00
split dynamics-transport integration 3
global min, max w -1.47334 0.398035
global min, max u -88.7086 89.8717
Timing for integration step: 1.05584 s
Begin timestep 2010-10-23_00:48:00
split dynamics-transport integration 3
global min, max w -1.42366 0.409874
global min, max u -89.0552 89.6703
Timing for integration step: 1.05487 s
Begin timestep 2010-10-23_00:54:00
split dynamics-transport integration 3
global min, max w -1.36798 0.419533
global min, max u -89.3859 89.6918
Timing for integration step: 1.05586 s
********************************************************
Finished running the atmosphere core
********************************************************
Timer information:
Globals are computed across all threads and processors
Columns:
total time: Global max of accumulated time spent in timer
calls: Total number of times this timer was started / stopped.
min: Global min of time spent in a single start / stop
max: Global max of time spent in a single start / stop
avg: Global max of average time spent in a single start / stop
pct_tot: Percent of the timer at level 1
pct_par: Percent of the parent timer (one level up)
par_eff: Parallel efficiency, global average total time / global max total time
timer_name total calls min max avg pct_tot pct_par par_eff
1 total time 38.42768 1 38.42395 38.42768 38.42597 100.00 0.00 1.00
2 initialize 27.78007 1 27.77629 27.78007 27.77822 72.29 72.29 1.00
2 time integration 10.58361 10 1.05390 1.06948 1.05791 27.54 27.54 1.00
3 atm_rk_integration_setup 0.08699 10 0.00697 0.01591 0.00778 0.23 0.82 0.89
3 atm_compute_moist_coefficients 0.05107 10 0.00401 0.00596 0.00466 0.13 0.48 0.91
3 atm_compute_vert_imp_coefs 0.19006 30 0.00314 0.00656 0.00613 0.49 1.80 0.97
3 atm_compute_dyn_tend 3.55226 90 0.02741 0.05774 0.03737 9.24 33.56 0.95
3 small_step_prep 0.35634 90 0.00138 0.00506 0.00376 0.93 3.37 0.95
3 atm_advance_acoustic_step 1.30132 120 0.00767 0.01498 0.01051 3.39 12.30 0.97
3 atm_divergence_damping_3d 0.13208 120 0.00050 0.00164 0.00092 0.34 1.25 0.84
3 atm_recover_large_step_variables 1.68000 90 0.01384 0.02795 0.01830 4.37 15.87 0.98
3 atm_compute_solve_diagnostics 1.93205 90 0.01398 0.02563 0.02049 5.03 18.26 0.95
3 atm_rk_dynamics_substep_finish 0.24644 30 0.00090 0.01696 0.00783 0.64 2.33 0.95
3 atm_advance_scalars 0.33402 20 0.01609 0.01956 0.01645 0.87 3.16 0.98
3 atm_advance_scalars_mono 0.25380 10 0.02070 0.02667 0.02453 0.66 2.40 0.97
3 atm_rk_reconstruct 0.03400 10 0.00275 0.00507 0.00323 0.09 0.32 0.95
3 atm_rk_summary 0.04237 10 0.00100 0.01612 0.00355 0.11 0.40 0.84
-----------------------------------------
Total log messages printed:
Output messages = 345
Warning messages = 0
Error messages = 0
Critical error messages = 0
-----------------------------------------
Logging complete. Closing file at 2019/03/26 16:16:55