From 696a6f1fcf27ac47d87679cf4048a92082fc4fc0 Mon Sep 17 00:00:00 2001 From: gbouras13 Date: Thu, 21 Sep 2023 19:26:35 +0930 Subject: [PATCH] pharokka proteins mash skip check --- bin/pharokka_proteins.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/bin/pharokka_proteins.py b/bin/pharokka_proteins.py index e4c2bd0..d5b11db 100755 --- a/bin/pharokka_proteins.py +++ b/bin/pharokka_proteins.py @@ -80,7 +80,7 @@ def main(): # dependencies logger.info("Checking dependencies.") - check_dependencies() + check_dependencies(False) # to check pharokka_proteins.py, don't need mash # instantiation/checking fasta and gene_predictor validate_fasta(args.infile)