From 4dfb748fb4e842c6950ba73ba1746eb54ee8a0a5 Mon Sep 17 00:00:00 2001 From: PaulineSGN <107857379+PaulineSGN@users.noreply.github.com> Date: Wed, 19 Jun 2024 14:41:30 +0200 Subject: [PATCH] Delete topics/ecology/tutorials/Ecoregionalization_tutorial/workflows/Ecoregionalization_Workflow.ga --- .../workflows/Ecoregionalization_Workflow.ga | 346 ------------------ 1 file changed, 346 deletions(-) delete mode 100644 topics/ecology/tutorials/Ecoregionalization_tutorial/workflows/Ecoregionalization_Workflow.ga diff --git a/topics/ecology/tutorials/Ecoregionalization_tutorial/workflows/Ecoregionalization_Workflow.ga b/topics/ecology/tutorials/Ecoregionalization_tutorial/workflows/Ecoregionalization_Workflow.ga deleted file mode 100644 index 4911fda05cd44f..00000000000000 --- a/topics/ecology/tutorials/Ecoregionalization_tutorial/workflows/Ecoregionalization_Workflow.ga +++ /dev/null @@ -1,346 +0,0 @@ -{ - "a_galaxy_workflow": "true", - "annotation": "", - "creator": [ - { - "class": "Person", - "identifier": "0009-0009-5969-8478", - "name": "Pauline Seguineau" - } - ], - "format-version": "0.1", - "license": "MIT", - "name": "Ecoregionalization_Workflow", - "steps": { - "0": { - "annotation": "", - "content_id": null, - "errors": null, - "id": 0, - "input_connections": {}, - "inputs": [ - { - "description": "", - "name": "env.tsv" - } - ], - "label": "env.tsv", - "name": "Input dataset", - "outputs": [], - "position": { - "left": 0, - "top": 0 - }, - "tool_id": null, - "tool_state": "{\"optional\": false, \"tag\": null}", - "tool_version": null, - "type": "data_input", - "uuid": "044b242d-3635-44d3-bab7-e079cc370391", - "when": null, - "workflow_outputs": [] - }, - "1": { - "annotation": "", - "content_id": null, - "errors": null, - "id": 1, - "input_connections": {}, - "inputs": [ - { - "description": "", - "name": "cnidaria_filtered.tsv" - } - ], - "label": "cnidaria_filtered.tsv", - "name": "Input dataset", - "outputs": [], - "position": { - "left": 0, - "top": 120 - }, - "tool_id": null, - "tool_state": "{\"optional\": false, \"tag\": null}", - "tool_version": null, - "type": "data_input", - "uuid": "388178ad-4a6b-4d39-8ce6-9d5f99d2622d", - "when": null, - "workflow_outputs": [] - }, - "2": { - "annotation": "", - "content_id": "toolshed.g2.bx.psu.edu/repos/ecology/ecoregion_brt_analysis/ecoregion_brt_analysis/0.1.0+galaxy0", - "errors": null, - "id": 2, - "input_connections": { - "enviro": { - "id": 0, - "output_name": "output" - }, - "species_files": { - "id": 1, - "output_name": "output" - } - }, - "inputs": [], - "label": null, - "name": "BRT prediction tool", - "outputs": [ - { - "name": "outputpred", - "type": "input" - }, - { - "name": "outputval", - "type": "input" - }, - { - "name": "outputspdistri", - "type": "input" - }, - { - "name": "outputplots", - "type": "input" - } - ], - "position": { - "left": 220, - "top": 0 - }, - "post_job_actions": {}, - "tool_id": "toolshed.g2.bx.psu.edu/repos/ecology/ecoregion_brt_analysis/ecoregion_brt_analysis/0.1.0+galaxy0", - "tool_shed_repository": { - "changeset_revision": "fc621f3f8226", - "name": "ecoregion_brt_analysis", - "owner": "ecology", - "tool_shed": "toolshed.g2.bx.psu.edu" - }, - "tool_state": "{\"__input_ext\": \"input\", \"abioticname\": [\"3\", \"4\", \"5\", \"6\", \"7\", \"8\", \"9\", \"10\", \"11\", \"12\", \"13\", \"14\", \"15\", \"16\", \"17\", \"18\", \"19\"], \"chromInfo\": \"/opt/galaxy/tool-data/shared/ucsc/chrom/?.len\", \"dec_env\": \".\", \"dec_species\": \",\", \"enviro\": {\"__class__\": \"ConnectedValue\"}, \"species_files\": {\"__class__\": \"ConnectedValue\"}, \"__page__\": null, \"__rerun_remap_job_id__\": null}", - "tool_version": "0.1.0+galaxy0", - "type": "tool", - "uuid": "b9b1d7c3-bc85-4c47-b094-43d29ca3eaf1", - "when": null, - "workflow_outputs": [ - {"output_name": "outputpred", "label": "coll_pred"}, - {"output_name": "outputval", "label": "coll_val"}, - {"output_name": "outputspdistri", "label": "coll_distri"}, - {"output_name": "outputplots", "label": "coll_plots"}] - }, - "3": { - "annotation": "", - "content_id": "toolshed.g2.bx.psu.edu/repos/ecology/ecoregion_taxa_seeker/ecoregion_taxa_seeker/0.1.0+galaxy0", - "errors": null, - "id": 3, - "input_connections": { - "envfile": { - "id": 0, - "output_name": "output" - }, - "occurencefile": { - "id": 1, - "output_name": "output" - }, - "predictionfile": { - "id": 2, - "output_name": "outputpred" - } - }, - "inputs": [], - "label": null, - "name": "TaxaSeeker", - "outputs": [ - { - "name": "output1", - "type": "tabular" - }, - { - "name": "output2", - "type": "txt" - }, - { - "name": "output3", - "type": "txt" - } - ], - "position": { - "left": 440, - "top": 0 - }, - "post_job_actions": {}, - "tool_id": "toolshed.g2.bx.psu.edu/repos/ecology/ecoregion_taxa_seeker/ecoregion_taxa_seeker/0.1.0+galaxy0", - "tool_shed_repository": { - "changeset_revision": "9dc992f80c25", - "name": "ecoregion_taxa_seeker", - "owner": "ecology", - "tool_shed": "toolshed.g2.bx.psu.edu" - }, - "tool_state": "{\"__input_ext\": \"input\", \"chromInfo\": \"/opt/galaxy/tool-data/shared/ucsc/chrom/?.len\", \"envfile\": {\"__class__\": \"ConnectedValue\"}, \"occurencefile\": {\"__class__\": \"ConnectedValue\"}, \"predictionfile\": {\"__class__\": \"ConnectedValue\"}, \"__page__\": null, \"__rerun_remap_job_id__\": null}", - "tool_version": "0.1.0+galaxy0", - "type": "tool", - "uuid": "e4225b0e-fec7-4132-abe9-aa7184389067", - "when": null, - "workflow_outputs": [ - {"output_name": "output1", "label": "summary"}, - {"output_name": "output2", "label": "taxa"}, - {"output_name": "output3", "label": "taxa_clean"}] - }, - "4": { - "annotation": "", - "content_id": "toolshed.g2.bx.psu.edu/repos/ecology/ecoregion_cluster_estimate/ecoregion_cluster_estimate/0.1.0+galaxy0", - "errors": null, - "id": 4, - "input_connections": { - "envfile": { - "id": 0, - "output_name": "output" - }, - "predictionfile": { - "id": 2, - "output_name": "outputpred" - }, - "taxafile": { - "id": 3, - "output_name": "output2" - } - }, - "inputs": [], - "label": null, - "name": "ClusterEstimate", - "outputs": [ - { - "name": "output1", - "type": "png" - }, - { - "name": "output2", - "type": "tabular" - }, - { - "name": "output3", - "type": "tabular" - } - ], - "position": { - "left": 660, - "top": 0 - }, - "post_job_actions": {}, - "tool_id": "toolshed.g2.bx.psu.edu/repos/ecology/ecoregion_cluster_estimate/ecoregion_cluster_estimate/0.1.0+galaxy0", - "tool_shed_repository": { - "changeset_revision": "e94a25eed489", - "name": "ecoregion_cluster_estimate", - "owner": "ecology", - "tool_shed": "toolshed.g2.bx.psu.edu" - }, - "tool_state": "{\"__input_ext\": \"input\", \"chromInfo\": \"/opt/galaxy/tool-data/shared/ucsc/chrom/?.len\", \"envfile\": {\"__class__\": \"ConnectedValue\"}, \"max_k\": \"10\", \"metric\": \"manhattan\", \"predictionfile\": {\"__class__\": \"ConnectedValue\"}, \"sample\": \"10\", \"taxafile\": {\"__class__\": \"ConnectedValue\"}, \"__page__\": null, \"__rerun_remap_job_id__\": null}", - "tool_version": "0.1.0+galaxy0", - "type": "tool", - "uuid": "2a7f3436-7011-464c-9381-790bf79eeb7e", - "when": null, - "workflow_outputs": [ - {"output_name": "output1", "label": "SIH_index"}, - {"output_name": "output2", "label": "data_to_clus"}, - {"output_name": "output3", "label": "databio_table"}] - }, - "5": { - "annotation": "", - "content_id": "toolshed.g2.bx.psu.edu/repos/ecology/ecoregion_clara_cluster/ecoregion_clara_cluster/0.1.0+galaxy0", - "errors": null, - "id": 5, - "input_connections": { - "envfile": { - "id": 0, - "output_name": "output" - }, - "predictionfile": { - "id": 4, - "output_name": "output3" - }, - "predictionmatrix": { - "id": 4, - "output_name": "output2" - } - }, - "inputs": [], - "label": null, - "name": "ClaraClust", - "outputs": [ - { - "name": "output1", - "type": "png" - }, - { - "name": "output2", - "type": "tabular" - }, - { - "name": "output3", - "type": "tabular" - } - ], - "position": { - "left": 880, - "top": 0 - }, - "post_job_actions": {}, - "tool_id": "toolshed.g2.bx.psu.edu/repos/ecology/ecoregion_clara_cluster/ecoregion_clara_cluster/0.1.0+galaxy0", - "tool_shed_repository": { - "changeset_revision": "edb8d19735a6", - "name": "ecoregion_clara_cluster", - "owner": "ecology", - "tool_shed": "toolshed.g2.bx.psu.edu" - }, - "tool_state": "{\"__input_ext\": \"input\", \"chromInfo\": \"/opt/galaxy/tool-data/shared/ucsc/chrom/?.len\", \"envfile\": {\"__class__\": \"ConnectedValue\"}, \"k\": \"3\", \"metric\": \"manhattan\", \"predictionfile\": {\"__class__\": \"ConnectedValue\"}, \"predictionmatrix\": {\"__class__\": \"ConnectedValue\"}, \"sample\": \"10\", \"__page__\": null, \"__rerun_remap_job_id__\": null}", - "tool_version": "0.1.0+galaxy0", - "type": "tool", - "uuid": "0c009e8e-6568-4d74-917e-b2b8ce680121", - "when": null, - "workflow_outputs": [ - {"output_name": "output1", "label": "SIH_plot"}, - {"output_name": "output2", "label": "cluster_points"}, - {"output_name": "output3", "label": "cluster_info"}] - }, - "6": { - "annotation": "", - "content_id": "toolshed.g2.bx.psu.edu/repos/ecology/ecoregion_eco_map/ecoregion_eco_map/0.1.0+galaxy0", - "errors": null, - "id": 6, - "input_connections": { - "cluster": { - "id": 5, - "output_name": "output2" - } - }, - "inputs": [], - "label": null, - "name": "EcoMap", - "outputs": [ - { - "name": "output", - "type": "png" - } - ], - "position": { - "left": 1100, - "top": 0 - }, - "post_job_actions": {}, - "tool_id": "toolshed.g2.bx.psu.edu/repos/ecology/ecoregion_eco_map/ecoregion_eco_map/0.1.0+galaxy0", - "tool_shed_repository": { - "changeset_revision": "b38b954b92b9", - "name": "ecoregion_eco_map", - "owner": "ecology", - "tool_shed": "toolshed.g2.bx.psu.edu" - }, - "tool_state": "{\"__input_ext\": \"input\", \"chromInfo\": \"/opt/galaxy/tool-data/shared/ucsc/chrom/?.len\", \"cluster\": {\"__class__\": \"ConnectedValue\"}, \"__page__\": null, \"__rerun_remap_job_id__\": null}", - "tool_version": "0.1.0+galaxy0", - "type": "tool", - "uuid": "9a6d6c5f-4ee1-41ee-be54-03cbe3642428", - "when": null, - "workflow_outputs": [ - {"output_name": "output", "label": "eco_map"}] - } - }, - "tags": [], - "uuid": "e839f90b-8242-49c9-a483-f502a0459c17", - "version": 1 -}